Basic Information

Insect: Dasysyrphus tricinctus
Gene Symbol: ush_1
Assembly: GCA_963921185.1
Location: OY992531.1:217916457-217931720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.015 4.2 10.1 0.0 1 20 179 198 179 200 0.90

2 9 0.0003 0.083 15.4 0.8 1 23 253 275 253 275 0.98

3 9 0.032 8.8 9.0 1.0 2 21 300 319 300 320 0.92

4 9 0.052 14 8.4 2.9 2 21 690 709 689 710 0.93

5 9 0.022 6 9.6 0.1 3 21 748 766 746 767 0.92

6 9 0.25 70 6.2 0.1 1 23 814 836 814 836 0.91

7 9 0.015 4.2 10.1 1.3 1 23 842 864 842 864 0.99

8 9 0.00043 0.12 14.9 0.8 1 23 943 966 943 966 0.96

9 9 0.51 1.4e+02 5.3 0.7 2 20 1104 1122 1103 1124 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.015	4.2	10.1	0.0	1	20	179	198	179	200	0.90
2	9	0.0003	0.083	15.4	0.8	1	23	253	275	253	275	0.98
3	9	0.032	8.8	9.0	1.0	2	21	300	319	300	320	0.92
4	9	0.052	14	8.4	2.9	2	21	690	709	689	710	0.93
5	9	0.022	6	9.6	0.1	3	21	748	766	746	767	0.92
6	9	0.25	70	6.2	0.1	1	23	814	836	814	836	0.91
7	9	0.015	4.2	10.1	1.3	1	23	842	864	842	864	0.99
8	9	0.00043	0.12	14.9	0.8	1	23	943	966	943	966	0.96
9	9	0.51	1.4e+02	5.3	0.7	2	20	1104	1122	1103	1124	0.91

Sequence Information

Coding Sequence: ATGTCCGAAAAATTAATACTCAGTGGACTCAAGGGGTTCTCAATAGTCATCTCAAAAACAAAAGATCTAAGCCCAAGCGATTTGAATGAGCAAACCGATCCGGTTGCTTCGGCTGACATTGATCAATCAGCCGAACCACCAACAACAGAATCCCTAATGGAGGAAGAAAATTTTCCGGCTACGAGTTCGCCCAGAACCCTATCACCACCCTCAGAACCAGAAGTTGATGACAGAAATTCACCTTCAGTTCAATCAGATCTCCAATCGGAAGCGAACTCACCGTCAGAACCAGACGATTCCTCATCAATAGTTCCTGCTGTCGCGGTAACTGCGATTCCTAAACTACGACTGAATGCACTACTAGCTTCTGATCCTGCTCTCAATCCAGATGCGAGAAATTTAAAGATTCTACATGAAGAATCAACAAAGAATCATTATCAGTTGGAGGAAACTTTACCTGCACCTGTCGATCAGAAGCCTTCTGTTAAGAGTCAAATTCCAGCAGCTGTGGATAATTCACAGCGTGTGAAAGTCTTTATGTGTCTTCCCTGTGGAATTGGATTCTCATCGAGATCGACTTTGGAAGCGCATCAAGCTTACTATTGTTCCCACAGAAAAGAAGCCGAAGAAGATTCGACAGGTGGTGGTGCTGGTGGTGGAAGTGGAGCTGGCGCTGGAAGCACATCATCAGGAGATAAATCCACCATCACATCCAGTGGGGAACCATCAGCGAAATCTATTAAGACTGGCAAGCAGTACGCTTGCACACAGTGCTCCTATAGTGCCGATAAGAAAGTCTCATTAAATCGTCACATGCGAATGCACCAAAGCTCTCCGGCACCAAGTTCGAATGCCTCCAATGGTGGCGATGATAGTTCTAGTCAACAAGTCGATCGTTACTGCTCCGAATGTGATATTAGATTCTCGAATGTTAAAACGTATCGTGCTCATAAGCAACATTATTGTAGTTCCAGGCGTAATGATGgCCAAACAACTCCAAAACTTGCAGAGCCAAGTGTTAAAACTAGTGGCGGTTCAGTTAGTCCTCCACAGGTGCGAACTAAAACACCAACACCAGCAGCTGTTGTAGCAGCTGCAGCAGCCGCAGCAGCAGCTGCAGTTGCACCACAACCATTTATTGCTCTGCCAACAAATCCCATTCTCATAATTCCATATTATTTAATCCGAGCTGCCAGTATGATTCCAGGGCCATTAACCTCAGTGTCTCCTGGAATTCCAAATCCTGAAAGCACATGTTTCTCACTTGAAAATGGATCTCTCAAACCAATGGCTACTGCCTTAAGCACCAGTAGCATTACAAATAACCAAATTCCACATGTGGATACAACGCCACGAACACATCCTCCACCATTACCAAGTACTCCATCGATTGCTGACACAAATGTTGTCACACCACTATTAACAGAGAAAAATACACGTGCATCATCTGCAAATAGTTGCAGTGATTCTGTGAAACAAACCAAGAAAGACATGCCCATAAGaGATTTTGCTCCACTTGATCTATCTCTGCGACGTTCTCCCATCCAAAGAGCCCATCGGGTTCGTTCGTCATCGAGTTTTATGACACCAATTGACGATAGAATCGACATTGAAACCATGATGGAGGGCAAGGAGAATTTATCCATTGATAGTGGTAGTATAACCCCGGAACAAATAGTTTGCGCTCCTTCTCTACCCAATAGCCCTTCAATGAGCCCCTCGCCGAAGAGAAGAGCCCTCAGTCCCAGAAGTAGCAGCGCTGCTTCAATATCACCAGTTCCACCTTCTGTTATGGATCATTTACCATTGAGATCTATGCTTCCTGCTGACATTGCCATGAAACTAACTGAATCCAATATAATTCCTCCGTTAATTGCAAAACAGAACCTAGAACTAGCCTTTAAGCTGTCGAATGCTTCAGCTGCAGCAGCCGCAGCGGCATCAGCTTCAAGCAAACAAAATGATTCCGGCAAGTCAGCATCACTCTTAGGACATCCTGGAACTCCTATTAGTGTGAGCTCAGCATCTAGTGGGCAGCCACAGATTTTCGTCAAACAAGGTGTCTCAAAGTGCAAAGAATGCAACATAGTGTTTTGCAAATATGAGAACTACTTGGCCCACAAACAACATTATTGCTCGGCTAGAAACCAAGAAGATTCCGAAAACAAGACCAGCACTCCTCCGTCGGGGTCCAGTGCTGGAGGAGTAGATACCAATCCAATTGCATATCAACAGTTGATCTGTGCGGCTTGTGGTATCAAATACACTTCTATGGATAATTTAAGAGCCCATCAGAAATTTTATTGTCCCAAAGGAGGTGGTGATGCTGCCGCTGCTGCTGCACCCATCACTAAGGAAAAATGTTCCAAGTGTAAGGTTCTACatgaaattggtcagccatgtCCGCCAACAGCGGCTACTGCTCAACCACAGTGCTCCTACAAATGCCCCGTTTGTGATGTTGTAAGCTTAACTGCTTCCGAAAGTCGCAAACATCTGGAAACTCATGGCAGTGTGAAGGCATTTCGCTGTTCAATCTGTCGCTATAAGGGAAACACATTGCGTGGCATGAGAACTCACATTCGGATGCATTTCGATAAGAAAACATCAGACTTTAACGAGGAGAATTACATGTCTTGCATATTAGAAGATGATGGCTTGGAAATTCCTAGTCCCGTAGCAATGAGTCAGGAGCAAATATCTCAAATAGCTGCAGCACATCAACAGCTTCAGCAACAACAGCACCAACAACACCAGCAACAGCAACACTTACTTCAACAACAGCCATCGACACAACAACATTCCCCACAGAATCCTCAGCAGATATTTAACTGTGAAATGTGTAACTACTCATCATCTTACAAAGGCAATGTGATGCGTCACATGAAACTGGTACACTCACAACCTGGTACATCACCATCGATTTCTCCTGAAGTAGTCATCGAAGAAAGTGAGTCATCATCAGCAATTCAAACCCTTAATGGAGACAACAATGGCAGCAGCCTTCCAGGGGGTTTCACCATCAAAACAGAACCCTTAGAGCCTATCGTCGTAGCTTCTGCCATCAAGAATAATAATTCTAATTCAACTCCAAATCATCATCCGCCTCATGCTCTACACCATTTGGAACCCCTAACACAAGTCAAATCTGAACCAATGGATACAGATATTAGTGTAATAAGATCTCTACACTCTCCACTCTCAATTCCTCCACCGCCACTCCTAAATTCAACATCTCCACTATCAGCCGATGAAAATTCCCTACTAAGAAATAGTACATCATCCGGAGGAATGccattaaatcaaaaatattgtCAAACGTGCGATATAACTTTTAATTATATGAAAACCTATTTAGCACATAAACAATTTTATTGTAAGAATAAACCAAGAGCTGATACAGATAGTCCGAGTCCAGTGACACCAGTGCAATCTCCAACTATGCTGACTAAAAATAAAGAGAATTTGGAAGCTGCGATGTTATAG
Protein Sequence: MSEKLILSGLKGFSIVISKTKDLSPSDLNEQTDPVASADIDQSAEPPTTESLMEEENFPATSSPRTLSPPSEPEVDDRNSPSVQSDLQSEANSPSEPDDSSSIVPAVAVTAIPKLRLNALLASDPALNPDARNLKILHEESTKNHYQLEETLPAPVDQKPSVKSQIPAAVDNSQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDSTGGGAGGGSGAGAGSTSSGDKSTITSSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQVDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSVKTSGGSVSPPQVRTKTPTPAAVVAAAAAAAAAAVAPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSPGIPNPESTCFSLENGSLKPMATALSTSSITNNQIPHVDTTPRTHPPPLPSTPSIADTNVVTPLLTEKNTRASSANSCSDSVKQTKKDMPIRDFAPLDLSLRRSPIQRAHRVRSSSSFMTPIDDRIDIETMMEGKENLSIDSGSITPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASISPVPPSVMDHLPLRSMLPADIAMKLTESNIIPPLIAKQNLELAFKLSNASAAAAAAASASSKQNDSGKSASLLGHPGTPISVSSASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDSENKTSTPPSGSSAGGVDTNPIAYQQLICAACGIKYTSMDNLRAHQKFYCPKGGGDAAAAAAPITKEKCSKCKVLHEIGQPCPPTAATAQPQCSYKCPVCDVVSLTASESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPVAMSQEQISQIAAAHQQLQQQQHQQHQQQQHLLQQQPSTQQHSPQNPQQIFNCEMCNYSSSYKGNVMRHMKLVHSQPGTSPSISPEVVIEESESSSAIQTLNGDNNGSSLPGGFTIKTEPLEPIVVASAIKNNNSNSTPNHHPPHALHHLEPLTQVKSEPMDTDISVIRSLHSPLSIPPPPLLNSTSPLSADENSLLRNSTSSGGMPLNQKYCQTCDITFNYMKTYLAHKQFYCKNKPRADTDSPSPVTPVQSPTMLTKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01357492;
90% Identity: iTF_00664445;
80% Identity: -