Basic Information

Insect: Dasysyrphus tricinctus
Gene Symbol: Sry-delta
Assembly: GCA_963921185.1
Location: OY992530.1:211673125-211674207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.2e-06 0.00034 22.9 1.2 1 23 142 164 142 164 0.98

2 7 0.0007 0.19 14.3 0.3 2 23 169 190 168 190 0.97

3 7 8.5e-06 0.0023 20.3 0.7 2 23 197 218 197 218 0.97

4 7 0.00055 0.15 14.6 1.5 1 23 224 246 224 246 0.97

5 7 1.2e-05 0.0032 19.9 2.9 3 23 255 275 253 275 0.97

6 7 8.5e-05 0.023 17.2 4.2 1 23 282 304 282 304 0.98

7 7 0.23 63 6.4 0.1 1 23 325 348 325 348 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.2e-06	0.00034	22.9	1.2	1	23	142	164	142	164	0.98
2	7	0.0007	0.19	14.3	0.3	2	23	169	190	168	190	0.97
3	7	8.5e-06	0.0023	20.3	0.7	2	23	197	218	197	218	0.97
4	7	0.00055	0.15	14.6	1.5	1	23	224	246	224	246	0.97
5	7	1.2e-05	0.0032	19.9	2.9	3	23	255	275	253	275	0.97
6	7	8.5e-05	0.023	17.2	4.2	1	23	282	304	282	304	0.98
7	7	0.23	63	6.4	0.1	1	23	325	348	325	348	0.92

Sequence Information

Coding Sequence: ATGAAAACAAAGTGTATTCTATGTCGCCAGCGTATTGACCCGAAATTGGGTTATTACAACATAGGCTACACCAGCATTGAACCCTCCAAGAAAACGATTAAAAATGTTCTCATACATATATCTAAGTGCATCAAAACAGAGTACTATTTTGAAGATAGTTCTCGTGTTTGTAACCCATGCTACGAAAAATTAGTTGAATACGATGAAATAATGATTAAGCTACTAAATTGCCAAAAAGAACTATCAAAAATGCtggaagagtctataaaatatatCGATAGCGACGACGAAACTTATGAAGATAATAATATCAAAGATGAGGAGTGTCCAAGTGATTTCTCCATGAATAATGATGGTGATAGCATAAGTGATTCAAATCAAGAATTCACAGAAAATAGCATCTTTGATCGTCCACCCCGTTCTTTTGAATGCAGCATCTGCGATAAAAGCCTAAGAACTAAAACCTCTCTTAAGAATCATCTAGATACTCATTCTACGGAAGTTAAATGTAAAGTTTGTGGAGCACTTTGCAGAGATGAAGAATACCTTGAATTACACATGAACATACATGAAGGAAAAACAGAAAACGAGTGCCGATATTGCCCTAAGAAGTATTCCCGCCGTGCAAATGTAATTCGTCACATGCAACTTCATtgggataaaaaaaaattccaatgtGAGAAATGCGGTATCCGGTTCTCACAAGCACACATTCTGTATAACCACAAAATGATCCACGAAGCTGAAGAAGAACCTATAATATGCAATATATGTGAACAATCATTTAAATCGAGAAAAACATTCAGACACCATATGATAACCCATCAAAAAGATCGGCCAATGCATACTTGTGAAATTTGTCTCAAGAAGTTCACCGAAAGATACAccttaaaaatgcatttaaaaacccACAGCAATTGCAAAGAAGAAGAATCAGaagtaccaaaaaaagtaaatactcCAGCGAAAAGATTCCCCTGCATCATATGCGAACAAGTTTTGAACACAATGGAAAGCCTTGAAAACCACAGAGCTAAGGAACACGATGTTATTAGCTCCGAAAATTATTTCGTAAAACTCTAA
Protein Sequence: MKTKCILCRQRIDPKLGYYNIGYTSIEPSKKTIKNVLIHISKCIKTEYYFEDSSRVCNPCYEKLVEYDEIMIKLLNCQKELSKMLEESIKYIDSDDETYEDNNIKDEECPSDFSMNNDGDSISDSNQEFTENSIFDRPPRSFECSICDKSLRTKTSLKNHLDTHSTEVKCKVCGALCRDEEYLELHMNIHEGKTENECRYCPKKYSRRANVIRHMQLHWDKKKFQCEKCGIRFSQAHILYNHKMIHEAEEEPIICNICEQSFKSRKTFRHHMITHQKDRPMHTCEICLKKFTERYTLKMHLKTHSNCKEEESEVPKKVNTPAKRFPCIICEQVLNTMESLENHRAKEHDVISSENYFVKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00894261;
90% Identity: iTF_00426635;
80% Identity: -