Dtri024709.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- -
- Assembly
- GCA_963921185.1
- Location
- OY992531.1:4489162-4491261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.46 1.3e+02 5.4 0.4 1 14 6 19 6 21 0.85 2 13 1.2 3.3e+02 4.1 0.2 8 23 198 214 189 214 0.82 3 13 0.0012 0.34 13.5 2.7 1 23 220 242 220 242 0.95 4 13 2.3 6.2e+02 3.2 0.2 2 10 248 256 247 258 0.85 5 13 2.2 6e+02 3.3 1.2 2 13 277 288 277 300 0.74 6 13 0.00064 0.18 14.4 4.8 1 23 306 328 306 328 0.98 7 13 0.0011 0.31 13.6 0.2 1 22 334 355 334 358 0.90 8 13 8e-05 0.022 17.2 1.3 2 23 385 407 384 407 0.91 9 13 0.0074 2 11.0 2.6 1 23 431 453 431 453 0.99 10 13 0.013 3.5 10.3 4.3 1 23 459 482 459 482 0.93 11 13 2.4e-05 0.0066 18.9 1.1 1 23 488 511 488 511 0.96 12 13 2.8e-06 0.00076 21.8 0.4 1 23 517 539 517 539 0.99 13 13 4.7e-07 0.00013 24.2 0.6 1 23 545 567 545 567 0.97
Sequence Information
- Coding Sequence
- ATGGGCGATGCAGAATATACCTGCCGGACTTGTGGCAAAAGTTCTGAACAGGAAGACAACACCGATCTGTTTCCTTTATACACATCCACCGAATATCACAATGAGCTTAAAATGATTTTATCAGAATTCGAAATATGgaatttaaatATATCAGAAAATGATGGTTTACCGCAAAAAATATGCCTAACATGTTTCGATAGCTTTTGTCAAATTCATAACTTCCGCATTATGTGTGAAGAAGCTCAAATGAATTTTGGCGAGTTATGCACAGGTTTGGATATAATAATCAAAATGGAATCTGAAATTAACGGCGATAATGATGGTAATCTCCCGGAGGATTTTGAAGGCGAACAAACTATAACCATACAAGAACACTATCAATTTCCTCGTGAAAAAAGTTCGAAACTATCAGAACCCCTGGTTGAGTCAAAACAAAGAATTGATCGATTAGAGAAAATTAACTCGGGCAATGAAGACGGAGAAAGTGGAGACTTAAATGACAAAGAAAAGGCTCGACAAGAAGAAATTGATGAAATGAATGCAGAAGTTCCAGAGTTCAAACCGCACAGGTGTGAATTTTGTATGGATATAGTGAGTTTCGATGATCCCGACTTGTTGAATGATCATTACAACGTATTACACAGTACCGATTTACCATACTTATGTCCGAAATGTGATAAATGCTTTGAAAGTAAAGTAAAGCGAAACATTCATGCCAAATCGCACTATCGTATCTTAGTTGAGTGTGATATTTGCGGGAAAAAGGTGAGAGGTGGTAAGCCGATGATGGCTCAGCACAATGAGTTGCATCACATTGAGATCGACCGTGAATGCCTAACATGCGGTAAGATATTTCCGAAAGCTACTTTGAAAACATTTAACTATCACATGAGTTGGCATGATGATGCCAAGCTGCACAAGTGCAAgtattgtgaaaaaaaattcattcaaataaCACATTTAGTGGTGCACGAAAAATCACATACGGGAGCTTGCGTATATCAGTGTTATGAATGTGGAATTGGATTTGCGAATGAAACTCTACTTaacgaacacaataaaaaaCAAGAACACAAACATGTGAATGATCCAGATGAAGCTATGGAAACACTTGAGGCAGCTCCAAAAAATAACGCTAGTAAAAAATCAACCCGTTGCGAAATTTGTGACAAATCTTTTCGATCATTAATAAATCTTCGTTTGCACAGTTACAAAAAACATGGAGCTAAACCTACACAAGGGGTtagagaaataataaagcagAGACAGAATCTCGTGATCATTAAGCCATTTAAATGCAGCAAATGTCCAGAATCGTTTCTGATGCACACGCAGTTAGTTATGCATTTGAAGACACACGATGAGAACAGGCCTTACAAATGCCCAACCTGCTCGAAAAGTTTCAAAaaggataaatatttaaaatgtcaCGTAGATACGgtgcacttgaagaaaaaagaaCATGTCTGCTCGACGTGTGGGTGGGCATTTGTATACAAGCATAGTCTTGAGGAACACATTGCCACAAAGCATAGTAACACAAAAGATTTCAAATGTGAAGTTTGTGAGAAAGCATTTGCATTTGAGAAGGCATTGAAAAACCATATGCTAACGCATAAAGAAGAAAAGCCGTTTGCGTGTACGGTTTGCAGCAAAAGCTTCCGACAATCAAGTGCACTTAAAGcacACGTAAAGTCACATCAAAAGAAGCAAGGCAAAATCGCTTCGAACTATGAGATTGACCAGATCGATGACTTTAAAAGTGAAGACATGGAATAA
- Protein Sequence
- MGDAEYTCRTCGKSSEQEDNTDLFPLYTSTEYHNELKMILSEFEIWNLNISENDGLPQKICLTCFDSFCQIHNFRIMCEEAQMNFGELCTGLDIIIKMESEINGDNDGNLPEDFEGEQTITIQEHYQFPREKSSKLSEPLVESKQRIDRLEKINSGNEDGESGDLNDKEKARQEEIDEMNAEVPEFKPHRCEFCMDIVSFDDPDLLNDHYNVLHSTDLPYLCPKCDKCFESKVKRNIHAKSHYRILVECDICGKKVRGGKPMMAQHNELHHIEIDRECLTCGKIFPKATLKTFNYHMSWHDDAKLHKCKYCEKKFIQITHLVVHEKSHTGACVYQCYECGIGFANETLLNEHNKKQEHKHVNDPDEAMETLEAAPKNNASKKSTRCEICDKSFRSLINLRLHSYKKHGAKPTQGVREIIKQRQNLVIIKPFKCSKCPESFLMHTQLVMHLKTHDENRPYKCPTCSKSFKKDKYLKCHVDTVHLKKKEHVCSTCGWAFVYKHSLEEHIATKHSNTKDFKCEVCEKAFAFEKALKNHMLTHKEEKPFACTVCSKSFRQSSALKAHVKSHQKKQGKIASNYEIDQIDDFKSEDME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694107;
- 90% Identity
- iTF_00664347;
- 80% Identity
- -