Dtri027137.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- -
- Assembly
- GCA_963921185.1
- Location
- OY992531.1:48849526-48861131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.4 9.3e+02 2.7 0.2 2 23 230 252 229 252 0.90 2 15 0.047 13 8.5 1.5 1 23 284 306 284 306 0.97 3 15 0.00022 0.061 15.8 1.1 1 23 312 335 312 335 0.93 4 15 0.00016 0.045 16.3 1.6 1 23 341 364 341 364 0.93 5 15 0.00046 0.13 14.9 2.0 3 23 372 392 371 392 0.97 6 15 0.0013 0.37 13.4 4.0 1 23 400 423 400 423 0.97 7 15 0.0078 2.2 11.0 0.2 1 23 430 453 430 453 0.90 8 15 0.012 3.3 10.4 0.3 1 17 459 475 459 475 0.93 9 15 2 5.4e+02 3.4 2.9 2 23 676 698 675 698 0.95 10 15 7.7e-06 0.0021 20.4 1.6 1 23 730 752 730 752 0.99 11 15 2.6e-05 0.0073 18.8 2.8 1 23 759 781 759 781 0.98 12 15 0.0015 0.43 13.2 3.6 3 23 790 811 788 811 0.96 13 15 0.037 10 8.9 3.4 2 23 820 842 820 842 0.96 14 15 0.00017 0.046 16.2 0.1 3 23 851 872 850 872 0.96 15 15 9.6 2.6e+03 1.3 0.3 1 12 878 890 878 892 0.83
Sequence Information
- Coding Sequence
- ATGCATTGTATTTTGTGTTTAAAACAGTCAAACAAATCAATAGCCATATACGGAGAGCATGGGCTTCGTCTGGACATCAAAagcatcataaacaaacacttcTGGCTTCAGCCAAATGAAGACGATACTAATTTTAACTTAATATGTTCATCGTGCTGGAAACAATTACAATCATTTCACAAATTCTATCAAGAAATCGAGGAAGCCCATGGCATGCTTAACAAAGTAATCCCTtcgattgaacaaaatttggaaGGCGAAGGCGAATTAAATGATTGTCTTTTGGATGGAAATGATGACATCCTGTATCCAGgcattaaaattgaattaaatgatGAATCTAATATCAAGTCACTCGATGTGGATGCCGtcgaagaaaatattaaatgtcCTGTAGAATTTGAAGTAAAATTTGATGAAATTGAATATGTGGGAGATCAGATGGACCCAGAGGATTCTGATTCAGAAATTCCCTTATCAAAGTTAACCGAACAACTGCAACATAAAGAAGAAAGTTTAGAAAAGAATTCTGCTACAAAGTCGGTTGACAAAggtaaacaaaccaataaaccAAAAATCCACATCCACGAAGGAGAATGGCTAGCCACTTGCTTTGGCGAAGAAACTGTTACAAAGCCAATTAGCCACGATGAATTGGATAAATTTATCAAATTGAATACGGAACTAACATGCGAGATATGTCGCATtccaatgaatgattttgcaACCCTCCAGGCGCATTTCAAAGACAAACATACAGTAAAACCCTTTGTAACTTGTTGTGACAAAAAATTCGAACTTCGTTGTCGATTGGTGGACCACATTGTATTGCACAAGCTGCCCAACTACTTTACATGTGTTGTATGTTCCAAAGTCTTGTCGTGTCgccttaatttaagaaaacacaTGGTTGTTCACGATAAAAAACAAGCTTTCCAATGTGATCAATGCGAAAAGACCTTCTACCGGAAAGAGGTCTTTAATCGTCATGTGTTGGATATACACACGTTAGATCGGAAATTTAAATGTGAAGAATGTGATAAGCTTTTTGCTTCGAAATGTTCATTGAACACGCACATCTACGGTGTTCATAAAGGTcgatataaaaaaatttgtgagcaATGCGGCAAGGTCTCTTGTGATCAAGAAACTTTTCTCCGACACCAAATGAAACACTCAAATAAACCACAACAATATTTTGAATGTCCAAAATGTAGTGTCAAACTTTCAACCAAACATGGACTACGCCATCACATAAGATATCAACATTCAGAAGACACCCGAGAACACGTTTGCAATGTTTGTGGAACCATAGCAACAAATGAAGCGGCATTGAAACGACATGTTACGTTTATGCACAAATATAAACGTGATTTCAAATGCTCGTTGTGTGAAAAGGCCTTTAAGAGAGCTGTTACTTTGAAGCCAAATGCTGAAATGAACAATGCCAAAGCTATATGCTGGTCGTGTTGGGATATGGTAGAATCATTTcataagttttataaaactgtCGAAGAGGCCCACGCTAAACTTACAGCATGCCTTAAACTACCCGATAAGGAAAGTGGCCATGAATCGACTCATTTTGAGACCCTTCCTGAATTGTTTCCAACAGTTGTTAAACAAGAACATTCTGAAGAAACTACCAAACATGAGCTGCCCGAAATCCCAGAAGCAGCCCAACCTATTGAAGTCTTTGCAAAAATTGACGAGGAGGATGACTTTCTGAATTCTGACACTGAGTCGGAAGTTCCTCTCGTCAAGTTAAGTAATCGCAGAAGCTCCTTGAAAGACGAAACGTATGACGAAAGCAAAGACAATGAAACTGAATCGGAAGACGCTTCCTTCGCCCAAGACAACGACAATCAACAACAGAACTTCGATTCCGAGAGCGACAGCGACAGCGACTACAATGCACCAAAGAAGAAAGCTAAAGTAAAATATTCGTCGAAGACTAATAATTTAGGAAAACATACAATACCCTGTAAAGAATTCGATagttttattaagaaaaatatggAACTTTCATGCAGTTTGTGTACCAAACCCCTTGAGAACTTCTTCTGCCTTAAAGagcacttcaaaaaaattcacaaaacagATCCTTTTGTAATCTGCTGCGATAAGCAATGGACCAGCCGTTTTTCCCTTGTACATCATTTACTACTGCATCAAGACCCAGATCTATATAAGTGTGCAAAATGCGGTCGAGTATTGGCCAATAAGAGGTCTTTTAAACGTCACATGCAATCGCATGTGATCCAGGAACGCATTCATCAGTGCCCAAAATGCAAGAAAATGTTTTCGTCCATTCCGAAATTGgagaaacatttaaaatcacaCATTCGAACACACACCGATCAAATATGTGAACAGTGTGGTAAAGTTTGCCACAGCAAGCAGAGTCTGAGTGCCCATCAGAAGAGAGAGCATATGGGCTTTGTAAAGCAAAAAGCACAATGTACGAAGTGCGGGAAATATTTGTCGGACTCATCAACTTTACATTTTCATATGAAGTATCAACATCCAAAAACTAAAGTTGTAAATGCTTGCACGATTTGTGGGAAAATATCGGCAACTGCATATGGACTGAAGAGGCACATACAATATATGCACACAATGGAGCGTGTACATAAGTGTACTATATGTGAGGACAAAGCATTCAAGACAGCCCAGATACTCAGGGTAAGTCAAAGTGTTGCATACTTTCAAATATTCTCATCGAAAGCAAGAAAGTTTAGATTAATTAAACATTTGTATTTGGGTCctagaaagaatattgttaagTTCTCAGTAGAAACATACAAATCGTTCTGGACCCCAAGAGTGGTCTTTACATGTTTTGCAGAAACCACAGAATAA
- Protein Sequence
- MHCILCLKQSNKSIAIYGEHGLRLDIKSIINKHFWLQPNEDDTNFNLICSSCWKQLQSFHKFYQEIEEAHGMLNKVIPSIEQNLEGEGELNDCLLDGNDDILYPGIKIELNDESNIKSLDVDAVEENIKCPVEFEVKFDEIEYVGDQMDPEDSDSEIPLSKLTEQLQHKEESLEKNSATKSVDKGKQTNKPKIHIHEGEWLATCFGEETVTKPISHDELDKFIKLNTELTCEICRIPMNDFATLQAHFKDKHTVKPFVTCCDKKFELRCRLVDHIVLHKLPNYFTCVVCSKVLSCRLNLRKHMVVHDKKQAFQCDQCEKTFYRKEVFNRHVLDIHTLDRKFKCEECDKLFASKCSLNTHIYGVHKGRYKKICEQCGKVSCDQETFLRHQMKHSNKPQQYFECPKCSVKLSTKHGLRHHIRYQHSEDTREHVCNVCGTIATNEAALKRHVTFMHKYKRDFKCSLCEKAFKRAVTLKPNAEMNNAKAICWSCWDMVESFHKFYKTVEEAHAKLTACLKLPDKESGHESTHFETLPELFPTVVKQEHSEETTKHELPEIPEAAQPIEVFAKIDEEDDFLNSDTESEVPLVKLSNRRSSLKDETYDESKDNETESEDASFAQDNDNQQQNFDSESDSDSDYNAPKKKAKVKYSSKTNNLGKHTIPCKEFDSFIKKNMELSCSLCTKPLENFFCLKEHFKKIHKTDPFVICCDKQWTSRFSLVHHLLLHQDPDLYKCAKCGRVLANKRSFKRHMQSHVIQERIHQCPKCKKMFSSIPKLEKHLKSHIRTHTDQICEQCGKVCHSKQSLSAHQKREHMGFVKQKAQCTKCGKYLSDSSTLHFHMKYQHPKTKVVNACTICGKISATAYGLKRHIQYMHTMERVHKCTICEDKAFKTAQILRVSQSVAYFQIFSSKARKFRLIKHLYLGPRKNIVKFSVETYKSFWTPRVVFTCFAETTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -