Dtri027580.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dasysyrphus tricinctus
Gene Symbol
Znf574
Assembly
GCA_963921185.1
Location
OY992531.1:57831787-57833279[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.11 29 7.4 0.0 2 23 128 150 127 150 0.94
2 10 0.46 1.3e+02 5.4 1.1 6 23 159 176 159 176 0.98
3 10 0.00022 0.061 15.9 3.0 1 23 182 205 182 205 0.98
4 10 0.00067 0.19 14.3 0.8 1 23 213 235 213 235 0.91
5 10 1.4e-06 0.00039 22.7 0.2 1 23 243 266 243 266 0.96
6 10 0.026 7.1 9.3 0.1 3 23 274 294 273 294 0.95
7 10 0.00022 0.06 15.9 0.6 2 23 303 325 302 325 0.96
8 10 0.00027 0.074 15.6 0.0 1 23 332 355 332 355 0.96
9 10 1.8e-06 0.00048 22.5 4.9 1 23 361 383 361 383 0.99
10 10 8.7e-05 0.024 17.1 4.8 1 23 389 412 389 412 0.98

Sequence Information

Coding Sequence
ATGGATattgtaaaagttgaaaaacCAGCCTTTACTGATTTCTCTGAAACAAATGCATCTATTCTAAAGCGAAGGGTGACGCGAGGGTCAACTTCCAAAACTGATTTCAACAATTTGTCAGacttgaaagaaaaacaaagtcAACAGATTGAAGTTGGAAAGCATGAATCGACTAGAAAAacagaagatgaagatgaagaaggGAGAACTAAAGACATCAGTGATACAAGCACCGCCTCCAAGgtggagaaaataaaaattcgatCCAGAAAGAGTGAACAAAacgatttaaaagaaaaagcaaACAAGTCTGAAAAATTCTTAAAGGATATGGAAATTTCTAAGGAATTCGATGAAATCATTCGAAAACATATGAACTTATCATGCGATATTTGCTCCATTCAACTTGCTGACTTTGCCGAGTTGAAAGTTCATTTTAGACTTGTTCACAAACGTGCAGGATATGCGGTTTGTTGCAACAAGCGACTCTGTAAACGTAGTCGGTTAGTGGACCATATTAACGTGCACAAAAATCCTGAGtattttaaATGCACAGAGTGTGGAAAAATTTTATCAGATAGAATCTGCCTTCATAATCATATTATAACGTTCCATCAAACAgaagaactaaaaacatttcGATGTGATTATTGCCCTAAGAAATTTGCCGCACAATACCTGCTGGATAAGCATAGTGTACAACACGTTCcacaaaatgaatttaaattcatCTGTAGTGAATGTGGAAAGGGATTCCCAACAAATACAACCCTGAAAGCACATTTGAAACAAGTCCACTCAACAATATACGACCGAATATGTGAAATCTGTGCCAAACGGATTCGAGGTAAAGCAGCTTTAAAAAGACATGTGGAAGAGCATAAGGGCATTTTTCTTCCACAACTTCAATGCAAAGAATGTGGTATCTGGTTGAAGGATAAAAGTAATCTTCGGAAGCACACGTTGACACAACACTCAAATGAAGATAAAAATTTTGCATGTGATGTCTGCGGAAAAAAAGCGCCATCGAAAGGTGCTCTTCAAGGTCACATGAAATACGTTCATGAACTATCGCGAATTTTTAAATGTACATTTTGTGATAagtcatttaaaaaagaaactcaCCTAAagGAACACATGGCAACTCACACTGGAGAAGTACTTTACACATGTCCGTATTGCCCAACAACATTTAACTCAAAATGTAACATGTATGCTCATCGGAAGAAGAAGCATCGAGAAGAATGGGAAGCCAATAGGGCATTATCCAAAAAAGGAAAGAATATAATAGAAATTAAAACTGAATAG
Protein Sequence
MDIVKVEKPAFTDFSETNASILKRRVTRGSTSKTDFNNLSDLKEKQSQQIEVGKHESTRKTEDEDEEGRTKDISDTSTASKVEKIKIRSRKSEQNDLKEKANKSEKFLKDMEISKEFDEIIRKHMNLSCDICSIQLADFAELKVHFRLVHKRAGYAVCCNKRLCKRSRLVDHINVHKNPEYFKCTECGKILSDRICLHNHIITFHQTEELKTFRCDYCPKKFAAQYLLDKHSVQHVPQNEFKFICSECGKGFPTNTTLKAHLKQVHSTIYDRICEICAKRIRGKAALKRHVEEHKGIFLPQLQCKECGIWLKDKSNLRKHTLTQHSNEDKNFACDVCGKKAPSKGALQGHMKYVHELSRIFKCTFCDKSFKKETHLKEHMATHTGEVLYTCPYCPTTFNSKCNMYAHRKKKHREEWEANRALSKKGKNIIEIKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00427525;
90% Identity
iTF_00427525;
80% Identity
-