Dtri048695.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- pol_2
- Assembly
- GCA_963921185.1
- Location
- OY992532.1:101062799-101084750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 7.7 9.2 1.8 3 23 805 825 804 826 0.94 2 12 3.5e-05 0.0095 18.4 3.8 1 23 835 858 835 858 0.96 3 12 3.9e-06 0.0011 21.4 3.8 1 23 1000 1022 1000 1022 0.97 4 12 2.2e-07 6.1e-05 25.3 3.2 1 23 1028 1050 1028 1050 0.98 5 12 0.0021 0.59 12.7 1.3 1 23 1056 1079 1056 1079 0.95 6 12 1e-06 0.00028 23.2 1.4 2 23 1092 1113 1092 1113 0.97 7 12 0.0006 0.17 14.5 0.3 2 23 1119 1140 1118 1140 0.96 8 12 4.7e-06 0.0013 21.1 0.5 1 23 1146 1168 1146 1168 0.96 9 12 1.9e-06 0.00052 22.4 0.7 1 23 1174 1196 1174 1196 0.98 10 12 1.2e-06 0.00034 22.9 0.9 3 23 1204 1224 1202 1224 0.96 11 12 3e-06 0.00083 21.7 1.2 1 23 1230 1252 1230 1252 0.99 12 12 0.00076 0.21 14.2 0.1 1 23 1257 1280 1257 1280 0.96
Sequence Information
- Coding Sequence
- ATGGAGCACGTTATTGATACTGGAGATGCGCTCCCTGTGAAACAGCGTCACTACCCTGTCTCTCCAGCGGTACAAGCCATCTTGTACGAAGAGTTAGATCGGATGTTGAGCCTCGGCGTTATCGAGGAGAGTGAAAGTCCCTGGTGCTCACCAGTAGTGCTCTTGCGGAAACCAGGCAAAAATAGACTTTGCCTGGATTCTCGCAAGGTGAATGCACTGACTAAGAAGAATGCTAATCCTCTCCCCCATATCGAGGGGCTCCTCAGCCGACTACCGGATACATACTACATTAGTAGTATTGATCTAAAAGAAGCATTTTGGCAAATACCTCTAGAGAAACAGAGTAGGGAAAAGACTGCCTTTGCGGTACCGGGGAGACCCTTGTACCAGTTTACTGTCATGCCCTTCGGGTTGTGTAATGCAGCCCAAAGGTTATGCCAGTTGATGGACAAGGTTATTCCTGCACGACTTAGGGATCGTGTCTTTGTTTATCTTGACGATTTGCTTATCATGGCGCCGGATTTTGAGACGCATATCGCCCTGGTAAGCGAAGTAGCTGACTGCTTACGCAGAGCGAATCTCACCATCAATATGAAGAAATCAAAGTTTTGCTTCAAAGAGCTAAAATATTTGGGCTTCATAGTTGGTGGTGGGAACCTTAAAACCGACCCTGCTAAGGTGGAAGCGATAGTGGATTTTCCAGTTCCCAAAACCCCGAGGCAGGTTCGGAGGCTACTTGGTTTAGCAGGGTGGTATCGGAAATTCATTAAAGACTTTTCGAGCCTGACTGCACCCCTGACGGACCTGTTGAAAAagcgaaacgaaaaatttaaaatgacagAAGAGGCACTGAGAGCGTTCGAGGATCTGAAGCAGACGTTAACTACCGCCCCGGTTCTTACGCATCctgatttttcaaaaaggttttacaTTCAGTGTGATGCTTCAGATGTGGGAATCGGAGCGGTACTGTTTCAGAAAAATGCTGAGGAGGAAGAAGTCCCGATTGCCTTCTTCTcccaaaaattcaataaaagccAGAGAAACTACAGTGTGACCGAGAAGGAGTGCATGGCAGCGGTGATGGCTGTGCAAAAATTCAGGCCGTATGTCGAAGGCATGGATTTTACCGTAATCACCGACCACTCCAGTCTTAAATGGCTCATGAGCATGAAAGACCTTAGTGGTAAGCTCGCCAGGTGGAGCCTGGTACTGCAATCCTATGCCTTCGACATACAGCATCGAAAAGGCAGCCTGAACGTAGTTCCGGACACTCTTTCTCGGGTACATGTAGATTCTCTGGACTTAGAAGACGTGGCACCGTTAGTTGATTTGAACTCTTCCGAATTTCGATCCGATGAATACTTAAGTTTAATAGAAACGATTAAAAACCATACCGACGAACTCCCGGACCTTAAGATAGAAGACGGAtttgtttacaagcgcgcgttTACAAATAGTGTAGGTGATGAAGTTATGCAAGAGCATACATGGCTGCTTTGGGTTCCTTCAGGCTTAACCGAAGAACTCATTAAAAAGGCCCATAATCCACCTCAAGTAGCTCACGGAGGAATAGCTAAAACGCTATATAGAGTTCGGCAAAACTTTTACTGGCCAAACATGACAATTCAAATTCGAGAATACGTGTCTAAATGTTCTGTTTGTAAAGAGAGCAAAGCCTCGAATCAAATATCTCGTCCCCCTATCGTCAACTCATTTTGTACCGATCGTCCTTTCGAAAAACTATACATTGATTTTTTGGGTCCCTATCCCAGGTCCAAATTGGGGAATGCCTTCGTGTTTGTTGTGTTAGATCATTTatctaaatttgtatttttaaaagcatTGAAAAACGCGAACACTTCTAGTGTTATAAAATTCTTGCACCACGAGGTGTTTAATATGTTTGGCGTACCCCGTATAATCCATTCGGATAATGGAAAGCAGTTCCTGGCGAAGGAATTCCAGAACCTTTTGCAAAAATACGGGATTCAGCATTTTAGAACGGCAAACTATGCACCCCAATCGAACGCGTCGGAAAGGGTTAATCGCTCGTTGTTAGCTGCAATTCGTTCGTATTTAAAAACAGATCAACGCGATTGGGACTATCACCTTAGTGACATCGCTTGTGCCCTGCGAAGTGCAGTTCATAACTCTACCGGTGTATCTCCATATTTTGCGTTGTTCGGGACCAACATGATTATGCACGGTAGTAGTTATGAGCTAGCGCGAAAATTGAACGCGATTGCCGACAACGAGTTGTTGATTCTTCCTCGACGCGATCGATTGGAGTGCATACGAAAACGAATACGTGAAAACatattaaaatcaaatgaaagatcCGCCAAAACCTACAACGTACGAACACGGAAGGAACATCGTTTGGTCTCACATAAAGGGTCTGACAACAATTGCCGATTCTGTCTCAGAAAATTCAACCGCATCGGAGACCTTAAAAATCACATTGCTGTGCATCACCCGGAAATAAGCCATTTCAATCCCCATGAATGTCTTATCTGCAATAGAAGATTTACTCGGAAGGACCATGTCAATCGACACATGGCAAagattcacaaaataaaaagtggACAAATGTCTGATGAGGATGATGAAGATAACATAATAAATGAAGAAATAAAATCTGATGCTAATGAATTAGAGATGCTGATTGAAACTGAAATGGAATATGGAAAtcttacaaaaatagaaaataccTCCGAAATGATTACAAATAATGATCCTGAAGACTATGATGATGGAAGCATTGGTGCAGCAGAAAATCCATTCAGCAGCGATGAGGATGATAAGCCATTAGCTATTTTGCGAAGTACAATTAATACGAAAAATAAAGAGTCGGAAATTGTTCCAATAAAAGAAGAACTCGAAGAAAATCCCACCGATGTTGATCCATACCGTGTCCCAAAATCAGAAGAAATAGAAACTGATAATAAGGAGGACTCACTAGTCGCTGAGCATCCTCAAGAAGTAACTAAAAAATTTGAATGTTCCGTTTGCACTAAATCATTTGCGCGAAGCAGCCACCTGAAGCGCCATTTTCTTTCACATGTAGAAGAAAAACCATTCCCGTGTAAAATCTGTGATAAGAAGTTTACCCGTGCTGATCATCTTAAAAGTCACATGAGCAAGCATGATAATACAAGAGCGTTTAAATGTGATATTTGCAATCGATCTTATAATCGAGCGGATATTCTGAAACAACATAAAGAAAGAAAGCATAATTTGGACGGGCAGGGGTGGCCTCTGAAATCAGAATATTGTGAACTTTGTAATAAATCATTCAGCACTAAAGCGTATTTGCAAAAACACATGAGCATGCATAAGAATAAATCTTGGAAGTGCAAAATATGTCCAGTAGGTTTTGAGTCTAAAGAAGCTTTGAAGCAACACAATAAATCGCATGCCAAAGAGAGACCGTTTTTATGTTCGGAATGTGGCTTACGTTTTGTTAGAAATGATTATTTGCTGATCCATATGCGAAGGCACACCGGAGAGAAACCATACAAATGTAAATATTGTGATAAGGGCTTTCCACGGGCAACGGACTTAAATGTTCACGTTAAatatCATACCGGAGAGAAAACACATTTATGTACAATTTGCGGCAAGGGCTTCCAACGATCGTACAATTTAGTTGTGCACATGCGTGTGCATACTGGTGAAAGACCATATCAATGTTCCCACTGTCCGAAAAATTTTGCCCAGGGCAATGACTTAAAAGCACACATAAGGAGGCACACTGGTGAGCGGTATAAGTGCGAAATATGTGGAGTTGGATTTGTACAAGGCTACCTCTTGACTCAGCATAAAATCTCTGTTCATGCGGTTGAAGGCGAGGCCAGAAAAGGGCGAGTTGCTAAAGTAAAACCAAATAAACCAATACCAGAGGATATATCCGAGGCTATTGATGACCCCCAAAATGATATTAAAAGTGAACCAGAAACTTGTAACATTTTTCAGGGGCTGCCGTTTATAGAAAACCAGTCCTCGGTTGAATAA
- Protein Sequence
- MEHVIDTGDALPVKQRHYPVSPAVQAILYEELDRMLSLGVIEESESPWCSPVVLLRKPGKNRLCLDSRKVNALTKKNANPLPHIEGLLSRLPDTYYISSIDLKEAFWQIPLEKQSREKTAFAVPGRPLYQFTVMPFGLCNAAQRLCQLMDKVIPARLRDRVFVYLDDLLIMAPDFETHIALVSEVADCLRRANLTINMKKSKFCFKELKYLGFIVGGGNLKTDPAKVEAIVDFPVPKTPRQVRRLLGLAGWYRKFIKDFSSLTAPLTDLLKKRNEKFKMTEEALRAFEDLKQTLTTAPVLTHPDFSKRFYIQCDASDVGIGAVLFQKNAEEEEVPIAFFSQKFNKSQRNYSVTEKECMAAVMAVQKFRPYVEGMDFTVITDHSSLKWLMSMKDLSGKLARWSLVLQSYAFDIQHRKGSLNVVPDTLSRVHVDSLDLEDVAPLVDLNSSEFRSDEYLSLIETIKNHTDELPDLKIEDGFVYKRAFTNSVGDEVMQEHTWLLWVPSGLTEELIKKAHNPPQVAHGGIAKTLYRVRQNFYWPNMTIQIREYVSKCSVCKESKASNQISRPPIVNSFCTDRPFEKLYIDFLGPYPRSKLGNAFVFVVLDHLSKFVFLKALKNANTSSVIKFLHHEVFNMFGVPRIIHSDNGKQFLAKEFQNLLQKYGIQHFRTANYAPQSNASERVNRSLLAAIRSYLKTDQRDWDYHLSDIACALRSAVHNSTGVSPYFALFGTNMIMHGSSYELARKLNAIADNELLILPRRDRLECIRKRIRENILKSNERSAKTYNVRTRKEHRLVSHKGSDNNCRFCLRKFNRIGDLKNHIAVHHPEISHFNPHECLICNRRFTRKDHVNRHMAKIHKIKSGQMSDEDDEDNIINEEIKSDANELEMLIETEMEYGNLTKIENTSEMITNNDPEDYDDGSIGAAENPFSSDEDDKPLAILRSTINTKNKESEIVPIKEELEENPTDVDPYRVPKSEEIETDNKEDSLVAEHPQEVTKKFECSVCTKSFARSSHLKRHFLSHVEEKPFPCKICDKKFTRADHLKSHMSKHDNTRAFKCDICNRSYNRADILKQHKERKHNLDGQGWPLKSEYCELCNKSFSTKAYLQKHMSMHKNKSWKCKICPVGFESKEALKQHNKSHAKERPFLCSECGLRFVRNDYLLIHMRRHTGEKPYKCKYCDKGFPRATDLNVHVKYHTGEKTHLCTICGKGFQRSYNLVVHMRVHTGERPYQCSHCPKNFAQGNDLKAHIRRHTGERYKCEICGVGFVQGYLLTQHKISVHAVEGEARKGRVAKVKPNKPIPEDISEAIDDPQNDIKSEPETCNIFQGLPFIENQSSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -