Basic Information

Insect: Dasysyrphus albostriatus
Gene Symbol: ci
Assembly: GCA_946251825.1
Location: CAMIUB010000300.1:169948-175519[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00022 0.032 15.7 0.5 3 23 344 367 342 367 0.94

2 5 0.084 13 7.5 0.2 1 23 375 402 375 402 0.84

3 5 0.016 2.4 9.8 5.0 1 23 408 432 408 432 0.97

4 5 0.00027 0.04 15.4 0.4 1 23 438 463 438 463 0.97

5 5 1.1e-05 0.0016 19.8 0.3 1 23 469 494 469 494 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00022	0.032	15.7	0.5	3	23	344	367	342	367	0.94
2	5	0.084	13	7.5	0.2	1	23	375	402	375	402	0.84
3	5	0.016	2.4	9.8	5.0	1	23	408	432	408	432	0.97
4	5	0.00027	0.04	15.4	0.4	1	23	438	463	438	463	0.97
5	5	1.1e-05	0.0016	19.8	0.3	1	23	469	494	469	494	0.96

Sequence Information

Coding Sequence: ATGCAATGTCGCAATGTTGCTAATGAAGATGTCAAAAATTATTCAGAATTACAATATCTGGCATCGAGACGTGCAGCAGCTGTAGCTGCAGCGACCACAGCGTTACCTCCACCACCGCCTCCACAGCCAACGTCAGCAGGTGCTGGACAAACTGGACTTAGCCAGCCACCGCAACCACATGATTTCCATCCAGCTTACAGGATTCCTGGTTATATGGATCATCTGTATTCCCTTCAAAGAGCAAGTCCAACGCCATCCTTTCACGATAATTATCTTCCTAATTTTGCGCCATCATTCCATTTAACAGGGCTCGGACTGAACTCAGATTACTTGGGGTCACGTGGTCCCTTAGGTGATATTCACCCGGCCAGTTCGCTGGCCAGTTCAGACTTTCATTTTAGCATAGATGGCTCGAGACACAACAGCCCTCGGCCTGGAAGTATCCGGACAAGCATTAGTCGAAAGAGGGCTTTGTCGTCTTCGCCATATTCAGACTCGTTCGATATCAACTCAATGATACGATTTTCACCGAATTCGCTGGCGACCATTGTGAATGGATCAAGAAACAGCAGTACCAGTGGATCTTATGGCCATTTGTCAGCAGGTGCTATAAGTCCTAGTTTAGGAATACACAGCAGTATGACGCCACACTTACAACAGCTGCAAGCACATCTGCTACGAGCAGGAGCCGGACTCCTACATCCAATCCCCTCTCATCACACTTCCGCCGGAACTGGAATGTTTTCTATTGGCCACCATTCTTTGCAAGGAACCGGTAATACGCTATCAAAGTCTATTCACTTTGAGGAAATGTCTGCGAAGAACATTGAACAGCCATCATCCACTTCCGGTGGAGTTGTACAGGTTGAGGCTGATAGCGCTTCAAATGCCCTGGCAACCTCAGCGGCATCAAGGCGATATCGTTGCAAGCGTGAATCGATTCTGACCTCTCATCACAACGAAAACGATGCTCCGATTGTTGACACAACTGATATCAAAGATGAGCCTGGAGATTTCATAGAGACCAATTGCCATTGGCGCGATTGTGGCATAGAATTTTCCACCCGAGAAGAACTCGTCAAGCACATCAACAATGACCACATCCAGGTTAACAAGAAGTCATTTGTGTGTCGTTGGGAAGATTGTTCTCGCGATGAAAAACCATTTAAAGCCCAGTACATGcttgtggtacatatgcgccggcatactggagaaaagccacataagtgcacgtttgaaggatgctgcaaagcatattctcgtttggaaaatctcaaaactcatcttcggtcacatactggagagaaaccatatacttgcgagtatcctggttgcagtaaagccttcagcaaTGCTTCAGACCGAGCCAAACATCAAAATCGAACGCACAGTAATGAGAAGCCATATATATGCAAAGCTCCAGGATGTACGAAAAGATATACCGATCCAAGTTCGCTGAGAAAACACGTCAAAACGGTTCACGGTGCTGAGTTCTATGCAAACAAAAAACACAAAGGCTCCTCTAGTGAAGGTGGTAACGATGACGGATCGAGAATTGGAACGAGTCATCATCAAATCGATTCCAGTCCACGAAGTGATGACATGCAGTCAGGAAAAACAACAAGTCTATCTAGTCCTAGTATCAAGTCTGAATCGGAAGCGAATTCACCCGGACATCCGCCCATAAATAGTCCCATGAGCGTTTCCCATCACGTGATCAAGAGTAATGCTGACGAATACGAATGTATGACCCTAAACACGCCTGCCAGTGGGGATATCATGGAAATGGAAGACCACAACACATGGCCCTATGAAGAGGAGGACTTTGAGGTAGCTGAATTACCACTGGTTCTACGGGCCATGGTTGGTATTGGCGGTGGCGCTGGTGGTGGCGGCGGAGGAGGTGGTATCTCAACGGTTAGCCCACGCCATCGATTCCGCAGTCGCCTCCAATCGAAAGGAATGAACCCAACACTGTCCAACATACCAGAATTGAATCGTTGCAATATTGGAATTGGAGAACTGAATCAGAGAATCACGGACTTAAAAATGGAGCCTGGCACACCGACCAGCACTGTTATTCCTAAGCTGCCATTGCCTCAAAATGCTCACATGACTGAACTGCAAACTCGCCTGCAAAATTCCCAGTACGTACCCAATCCTCTAATGCGTCGAGATAGCAGCAATTCGAATGCGAGCACATATTATTGCAGCATGCGTTCCATCGATGCCAGCCGGCGTAGCAGTCAAATATCACAACTGTCATCTATATCAACGATGCGTCCCTCCTATAACACCGGGTCATTTTACGATCCAATATCGCCGGGATGTTCCCGTCGTTCTAGTCAAACCTCAGTTGCAATCACAAATGGACACAGCCTTCCACCGCAGCCCTCATCGCATTTAATATCATCGCACTTGCAACGTTTGCAAAGCAATAGTTTTTGTAATTATCCGAGCACCAATGACCACCATGGTCGGTTTTCAATACCAAATCTTCCAACACAAAATTTCAACAACACCGATTCGGCACAGACCTCAATGGACCGCCGAAGACAATCAGAACCAACAATGAATAAGAGCACCGAAGCAATGATACTCTCGCCGTCACAATCGTTGATTATGAAATCCATTACGAACAAAGGTGTTGCCAAATCCAAACAGTCGGGTTCCCTACGAGATCATCATCCCAACGAAGAAGTTAACCTAGACGAAGTTGAGGAAGATGAAATGGTTGAAAACAAGCTCGTGATTCCAGACGAAATGCTACAGTATTTGAATCAGGTAGCTGACAAGCCCGGTGATCCCGTATTTTCACCAAACCCTGAAGAAAGGAACCGAACTGACACACCATGTATGCCAAGTCAGCAGCAAGATCCACAACCTGTCATCGCAAACCACTGGCCTATGAACTCAGCAGCAGCACAGCAATCAGAAATCGAGATGCCACAACGTTCGTCGACATTTCACTCACGCAGTTCCACAAGTTTCGTTACTTCAATTCCAAGATCCCAGTCACACGAAACACCATCAATTGGAAGATCTCATGTGCCACAAGAATCTCAACCATCTGTTAGTCTCCGAATGTATAACCAAGCACCGGTTTTGGATTGTGCATCGCAAGCGTTTTGCAGTCACTATCAACACCACCAGGAGCAACAACATCAACGTCCGCCAATCACCCATCTTCCGAGCCATCAACACAACTGCCAGCAATTTCCTCGACCAAACGTCGCATTTTGTAATCAACAGCAGTTGCAACACCCGCCAACAACGATACAACACCAACGCATACTTCCTTGCAGCCATGTCCCTGGCTACTTCCACAACACGGACAATAGTGCTTCCGGCTGCTGTTCGTCTCATATGAAGACTCGCTTAACCGAATTTGCATCTGGTGTGAATCCAAATAACTGTTGCGATTCATCGATGAAAAGCCTGTCAGACACAAAGGCTAGCAAGTGCAGCTATTACCACGAACAGCAAAACAGACACCCAGCTGCGGCATTGTCGCATCATAACCGCATGTACGGCTTTCATTTCCAGACGCCACCAGCATCAGTGGTGCCTTTGCCACAGCCCAAGGAAATCCAGTGCGGTGACATAAGCCAGTCGCAGATGTCACCAGCAATCGCTCCATCAATATCCACACCATGTAATGATGTCAACATTGGAAACCCTTCCGTTGGCAATCCCTCAGCGACACCGGTCAATATGTCGACCATAAAAGCATCAACGTCCGTGCACGAGCCACCAACTGTCTCGCAGCAGCTCCCAAGCCAAGCAAACAACAATGGAATGCGGCAGGACACCTACCAGCGAACTCTTGAATACGTACAAAATTGCCAGAATTGGCTCGAAAATACCACACAAATTGTAACCAGCTCTACACATCCTAGTTCAAATATGATCATCAATGATATGACAACATCGCTAAGTTCTCTTTTAGAAGAGAATCGATTCTTACAAATGATTCAGTGA
Protein Sequence: MQCRNVANEDVKNYSELQYLASRRAAAVAAATTALPPPPPPQPTSAGAGQTGLSQPPQPHDFHPAYRIPGYMDHLYSLQRASPTPSFHDNYLPNFAPSFHLTGLGLNSDYLGSRGPLGDIHPASSLASSDFHFSIDGSRHNSPRPGSIRTSISRKRALSSSPYSDSFDINSMIRFSPNSLATIVNGSRNSSTSGSYGHLSAGAISPSLGIHSSMTPHLQQLQAHLLRAGAGLLHPIPSHHTSAGTGMFSIGHHSLQGTGNTLSKSIHFEEMSAKNIEQPSSTSGGVVQVEADSASNALATSAASRRYRCKRESILTSHHNENDAPIVDTTDIKDEPGDFIETNCHWRDCGIEFSTREELVKHINNDHIQVNKKSFVCRWEDCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGSSSEGGNDDGSRIGTSHHQIDSSPRSDDMQSGKTTSLSSPSIKSESEANSPGHPPINSPMSVSHHVIKSNADEYECMTLNTPASGDIMEMEDHNTWPYEEEDFEVAELPLVLRAMVGIGGGAGGGGGGGGISTVSPRHRFRSRLQSKGMNPTLSNIPELNRCNIGIGELNQRITDLKMEPGTPTSTVIPKLPLPQNAHMTELQTRLQNSQYVPNPLMRRDSSNSNASTYYCSMRSIDASRRSSQISQLSSISTMRPSYNTGSFYDPISPGCSRRSSQTSVAITNGHSLPPQPSSHLISSHLQRLQSNSFCNYPSTNDHHGRFSIPNLPTQNFNNTDSAQTSMDRRRQSEPTMNKSTEAMILSPSQSLIMKSITNKGVAKSKQSGSLRDHHPNEEVNLDEVEEDEMVENKLVIPDEMLQYLNQVADKPGDPVFSPNPEERNRTDTPCMPSQQQDPQPVIANHWPMNSAAAQQSEIEMPQRSSTFHSRSSTSFVTSIPRSQSHETPSIGRSHVPQESQPSVSLRMYNQAPVLDCASQAFCSHYQHHQEQQHQRPPITHLPSHQHNCQQFPRPNVAFCNQQQLQHPPTTIQHQRILPCSHVPGYFHNTDNSASGCCSSHMKTRLTEFASGVNPNNCCDSSMKSLSDTKASKCSYYHEQQNRHPAAALSHHNRMYGFHFQTPPASVVPLPQPKEIQCGDISQSQMSPAIAPSISTPCNDVNIGNPSVGNPSATPVNMSTIKASTSVHEPPTVSQQLPSQANNNGMRQDTYQRTLEYVQNCQNWLENTTQIVTSSTHPSSNMIINDMTTSLSSLLEENRFLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00984608;
90% Identity: iTF_00427669;
80% Identity: -