Dalb029567.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- prdm10
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000510.1:528351-532932[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00032 0.048 15.1 0.4 2 23 478 499 477 499 0.96 2 10 0.0082 1.2 10.7 4.4 1 23 524 546 524 546 0.98 3 10 4.2e-05 0.0063 17.9 2.2 1 23 553 575 553 575 0.98 4 10 0.018 2.6 9.7 1.9 1 23 580 602 580 602 0.98 5 10 0.78 1.2e+02 4.5 3.9 1 23 608 631 608 631 0.95 6 10 0.024 3.6 9.2 1.9 1 23 636 658 636 658 0.98 7 10 0.068 10 7.8 2.7 1 23 664 687 664 687 0.95 8 10 1.8e-05 0.0027 19.1 1.9 1 23 741 764 741 764 0.96 9 10 9e-05 0.013 16.9 1.7 1 23 786 809 786 809 0.95 10 10 0.032 4.8 8.8 3.2 2 23 841 863 840 863 0.97
Sequence Information
- Coding Sequence
- ATGAGTGAGGGCTTAGAAAACTCAGAATCCCAACACAATAATTATGTTTATGGAGGATTCCAAAGGATCAGTTCCTATGACGCTAATATGTGCACAACTGCGGCGCGGTTTTGTCCATTCTTTGATAATACTAATGTCTCGAAGCCAACCAAAGAAAACGAAACTGTCTTTAAAAGCCTCATAAGTGTAAAATCTCCCAACCAAAATGAAGAAAACGGTGTGAGGCCCTCTATTAGTCTCAACGAGACTATGGACACTTCAAAGGTTATCAATCCACCTTATCTTGTCTACAATAATGAAATCCAAGTTGGTCATCAAAATGCTAACCTAGAAGTGTTGGTTAATAATGGAATCCCCAATACAGTAGCATTTAATGAACAGGGATTAAGTACTTCTGGTCGTGGTGGTCGTGAAGTAGAAATTGATTACATCCAGCAAATTGGTCATGGTAATGACGAGGAAACTGGAGAACCAATAGCAACTGGTATTGTCGTACATCGCTCACCAAACGGTCATTTGTATCAAAACTTTTATGTGACAAATGAAGATGGAAATCCAGGTGAAATTATTGAGCTTATTCCAATAGACCCTTCTGAGGTAACGCGTTTGGTTGATGCAGATAATGATTATGACCTGCAACCGTACGCATTCTCAACCGAAAGTCATATCGATGCTCTTGAAGCCCATGATACAATAAACAATGTTGTTGAATACGAAGGAAATGAACAACAAATATTAACAACAGAAATGCTAACAAGAGAACAACAGAGAATTTTATTAGAGACTACTATGTCACCATTGTTGGCTGCTGTAAATGATATCACCCAAAGAGATAAACAATTTTTGTCTTGCCTTAATTCGCAAATTACAGAAGAGCGACGTTCTGATAATTACAATAATAAAATCATTGCAAACAAAACAGCACCAGCAGAGGATGATGATTGTGATAGGACTATCGAGAGCCGAGCAAGAGCAACTCTTCCAACAAATTACCTCTATCTTGGCCCTATAAACGCTGATACAAATGAACCTTCTGTTTACGCTGCAAAAGAAATTCTACAAAGAACAAAGTTTGGTCCGTTCGAGGGAGAAATCCGTTTTACTAATGATAATTTTCTGAAAATATTAAGATCTCAACACCCACGTCACTACCCTCTTCTAATGATTGGAAAGTCGAAAATTCTCATCGTTACAAATGAAAATACATCCAATTGGATGCGATTTGTTCGTCTGGCCAAAACATTTGCCCAACAAAATTTACAAATAACCGAAGAAAATGGTAGAATATTTTTTAAATGTAGTCGCGATATTCACCCAAAAGAAGAACTACGAGCTGGCTATCATAGTGCCTATGCAGAAAAATATAATTTACTAGTACTAAAGCCATCTATTGAGGAGACTCAAAAACAATACGAATGCGATAATCCATGGATGTGTTTTGAATGCGACCAAAGGTTTCCAACTTCACAAGAAATGCAAACACATTTGAAAGTTCATGATTTAGAAGACGCATCATCTGCAAACAAATCAAAAACTAAAGCCATAAAAGTAACAGCAAAGCGTTCGGTGCATAAGTGTCAATTGTGCTCTAAAAGATTCTTGTCTGAAAATAAACTCGAGTCCCATCAGCGAACCCACTCCGACATCCATAAACCCCATAAGTGTCCTCATTGTGATCAGCGTTGTGCAACACCAGCAGCTCTTTCGGCTCATGTCCGTAGTCACACAAATCGTCTTTATTCATGTGTTTTTTGCCAAGAAACTTTCAAATATGTTTTGGACTTTAAGAAGCATGTTCTAAAGCATAGAGTTGATGGATCCTTCATCTGCTTTCATTGCAAAAAGAATTACAAAGAATATCAAATAGTTCGAAGGCACATACGAATTTTCCATCCAGCTGTTAAATACCCCTGCAACGAATGTGACCGTTTGTTTCTGCATATCAGCTTTCTGCGGCGCCACAAAGCCACTCATGCCAAGAAGAAAGCATTTCAATGTTCAAAGTGTGAACAAAAATTCCTTAAAAGGTTCGAACTTAGGCAACATGTAAAGGCTTTCCATAAAGTGAAAACAAAAATCAAGAAGCAACCAGCTGTTAAAGAAAAAAGTTCAGAGAAAAGTTTTGCTTCACAGTATCTTAAGCTTAATTCAAAAAAAGATAAACCAGCTAAGAACCCTAGGAACAATTCACCAGTATCAGAAAATTATCATCAGTCTCAATTTAAATGTAAAGAATGCAAACTAAGTTTTAAGCGACGTGGAATGTTGGTTAATCATATGGTGAAAAGACATCCAGAACAGAATATCGATTCCATTGAAGAGTTAAATCAACCTATTGTCAAACTTCAGACAATGTTTAAATGTCCGCATTGTCCGAAGGTATACAAGAACAACGCAAAACGAAAAGCTCATATTGTGAAGAATCATCCAGGGATGGAGATTCCACCGTCATTTCGTAAAAATCCCGTTTTAATTGATCCAAATGTCCAAACGGTGGGATGCATTAGGGCAGACGTGCAGAAGTGTCATTTGTGTTACAAACAGTACGTCTCGAGAATGCGTCTTATTACACACTACCGCAAGGCTCACATGAACGAAATTATACCAGAAATGCAACACAAGGAATTTTCGATTCAAAATTTAATCGAAGAACCTTGTATGGAACCAGTTTTGGATATCTACAGGCAACCAGTTTCGCCAGAAAATAAATTGTTAAAACTATCTTCTGCAGCACTTGAATTGTCTAGCATTGAAGATAGAAAATATTTTGATTTTCTCAATGAAAAATCAGATACCACAGATATAAGCAACAGAAGTAGCTATAAAATTGAGGAAAACGAGTTCGTTGAGAGTTCATCGAATGCAGAATTGAACCGTTTACCTGAATTATTTGAAGAATCAATAGTATGTATTTAA
- Protein Sequence
- MSEGLENSESQHNNYVYGGFQRISSYDANMCTTAARFCPFFDNTNVSKPTKENETVFKSLISVKSPNQNEENGVRPSISLNETMDTSKVINPPYLVYNNEIQVGHQNANLEVLVNNGIPNTVAFNEQGLSTSGRGGREVEIDYIQQIGHGNDEETGEPIATGIVVHRSPNGHLYQNFYVTNEDGNPGEIIELIPIDPSEVTRLVDADNDYDLQPYAFSTESHIDALEAHDTINNVVEYEGNEQQILTTEMLTREQQRILLETTMSPLLAAVNDITQRDKQFLSCLNSQITEERRSDNYNNKIIANKTAPAEDDDCDRTIESRARATLPTNYLYLGPINADTNEPSVYAAKEILQRTKFGPFEGEIRFTNDNFLKILRSQHPRHYPLLMIGKSKILIVTNENTSNWMRFVRLAKTFAQQNLQITEENGRIFFKCSRDIHPKEELRAGYHSAYAEKYNLLVLKPSIEETQKQYECDNPWMCFECDQRFPTSQEMQTHLKVHDLEDASSANKSKTKAIKVTAKRSVHKCQLCSKRFLSENKLESHQRTHSDIHKPHKCPHCDQRCATPAALSAHVRSHTNRLYSCVFCQETFKYVLDFKKHVLKHRVDGSFICFHCKKNYKEYQIVRRHIRIFHPAVKYPCNECDRLFLHISFLRRHKATHAKKKAFQCSKCEQKFLKRFELRQHVKAFHKVKTKIKKQPAVKEKSSEKSFASQYLKLNSKKDKPAKNPRNNSPVSENYHQSQFKCKECKLSFKRRGMLVNHMVKRHPEQNIDSIEELNQPIVKLQTMFKCPHCPKVYKNNAKRKAHIVKNHPGMEIPPSFRKNPVLIDPNVQTVGCIRADVQKCHLCYKQYVSRMRLITHYRKAHMNEIIPEMQHKEFSIQNLIEEPCMEPVLDIYRQPVSPENKLLKLSSAALELSSIEDRKYFDFLNEKSDTTDISNRSSYKIEENEFVESSSNAELNRLPELFEESIVCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -