Dalb033647.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000851.1:11203-15224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.2 3.4e+02 3.0 5.1 2 19 247 264 246 267 0.91 2 17 0.94 1.4e+02 4.2 1.9 2 23 278 299 277 299 0.87 3 17 0.081 12 7.6 0.1 3 23 308 329 307 329 0.94 4 17 8.6e-05 0.013 16.9 4.0 1 23 335 357 335 357 0.98 5 17 0.028 4.2 9.0 4.8 1 23 363 385 363 386 0.95 6 17 6.2e-05 0.0093 17.4 1.9 2 23 393 415 393 415 0.95 7 17 0.0013 0.19 13.3 0.1 1 23 462 484 462 484 0.96 8 17 0.0011 0.16 13.5 2.3 1 23 489 511 489 511 0.99 9 17 0.8 1.2e+02 4.4 0.2 1 23 527 551 527 551 0.95 10 17 8.9e-06 0.0013 20.0 2.2 1 23 555 577 555 577 0.98 11 17 0.29 44 5.8 1.3 1 23 583 606 583 606 0.95 12 17 0.005 0.75 11.4 0.6 2 23 612 634 611 634 0.96 13 17 5.9e-05 0.0089 17.4 0.3 2 23 638 660 637 660 0.96 14 17 0.00012 0.019 16.4 1.0 1 23 666 689 666 689 0.94 15 17 0.003 0.45 12.1 2.6 1 23 695 717 695 717 0.98 16 17 0.00052 0.078 14.5 3.9 1 23 723 745 723 745 0.98 17 17 0.00057 0.085 14.3 0.0 1 23 751 776 751 776 0.95
Sequence Information
- Coding Sequence
- ATGAAATCTAATTGTTTGCGATGTAATGTTTCACTCTCAAATGAGTACCAATTGATTTTCGATGAAACTGGAATTGAACTGCAGCTGGACAAACTTCTGGCTGAACACTTTGAAATCTCTGTTGTGAGAGATTCCAATACGACTCAAGCCCTATGCGATGAATGCGTTAATAAGCTTATAGAACTCTATGATACTCAAGCATATAATGAAGAAAAGTTAGAATTAAACGAGAATGATGAGAGCAATCATACAGTTATAACAACAACGACAGAAGTTGATATCAAAGATGAAGCGCACAACCAAGACGACGAAGATATGATTATTGAAGAAATTCAAGAGGAAATTGAGAATGAAGTAGACTTTGAAGAACTTATTGAAGAATCAACATTCACGGACAACGAAGAGTTTTATGGATTCAAGGAAACTGAAGAAAATGTAGATGACTTTGAAATGGTACCAAATCCGGGCGGTCTAAGCCTCCAAGACTATTTGAGCAATGTCATTAAAAGTGATCTGGAGCGAATAGACTTTGACCAGAATTCCATTTGCAAACTATGCGAGGAAACTTTACAAAGTCACAATGCTGTGCTTATGCACATTTTGGACAACCACCAAACTCAATCTGAACAGTATCTTTGCATATTCTGTGACAAGCAAAAACATTTCGATTCAATCACATACCTGGCCAACCACATTGTGTTAAACCACTACGACTTGAATTCGATTATGATTTATTGCACGTGTCCCGAGTGCAATTCGAGATTTTCATCATTTTTGGAATATAATAAACATTCATGCTACAAAAAGAATTTCGGTAGCCGTTTACAGCAAGAATGCGCTGAATGTTCGAAAAAGTTTATTTCTAATAAAAGGTATCGTTTTCACTTACAATTTCACCTAAAAAAACAAAAACCAAAAGCTTGTTTTATCTGTGATATTTTATTCTCTGATGAAAATGATTATTTTGAACACATTATGTTCGCTCATGAGAAGGATGACTCATTCGTATGTAAAAAATGTGATCGAGTATGCACAACAAAACAGCTTTATGAAAATCATATGAAACTACACGATGCAATTCGATCATTTCACTGTCCATACTGTTCGAAGTCTTATTTGTATAATCAAATGCTAATGAATCATATTCAACAACATCACACCGACGAGCAATCGAATGAATGTAAAATCTGTAAGAAATCTCTAGCCAATAGACATCTTCTAACACGACACATGCAGCTAGTCCATCAACAAGAAACAGAAAGCGATGTATTTGTATGTTTAGAATGCGGTCTCATTGGAATTTCTGAAGAAGATACAACGTTTCATGCGGATGATGAGAAATGCCAAGGATCAGAAGTCAGTATTGAGTGTTTGAAAATTGCTTACGCTTGTGAATTTTGTGAACTAGCTTTCAAAAGTATTGAGAATTTGAAGGAACATAGATTAGCTCATACGGATAACCTTTTTAAGTGCTATATATGTGACAGTACATATACGGAGTATAAAAAGTTGAAAACCCACATTCTCACGCACAATAACATAGAACCTATACAAAAGTCGTTTCCAATCAATAGACATTATGTGTGCAATTTCGATTCATGTGAGCAATCCTATCTAACATGGCCATCTTTACGAGCCCACAAAGTACGTCACGCAACGAAATTTACTTGCGAAATGTGCAGTCAAACATTTACCACCGAGTCAAAGCTCAATACTCACCTTAAATCTCACAATAATAATGAGGAATATCCTTGCCAATTTTGTTCGAAATTATGTGGTTCCCAAATGTCACTTTCTGTGCATGTTGCACGAAAGCATAATAATAATTGCAAAACATGTCCTATTTGCAATTCGACTTGTAATTCTGAAGCAGCCCTCAAAGAGCACATCGAAAGTCAACATACCGAAGTAAAATGTGAGCTGTGTGGCAAGATAACGAAAAATAAGCGAAATCTTGCAGTTCACACACAAATGATTCATAACCAAGTAAAGAGGTTCTTTTGTTCTGTCTGCAACAAGGGCTACTTTAACAAAAGCGATCTTAAAAGTCATGAAAGAGCGGTTCACGCAGAAGCTAATAAGTTCAAATGCCAATATTGCAACTTTAGCTCTAGCTATGAGACATCTTTTAACGCTCATCTGCTCAAACATGAACAAAATAAACCTTTTAAATGTGAAGAATGTTCAAGAGAGTTCACTCGCAAAGCCTGTTATAAACTGCATGTACTTAGGCATTCTGATACAAAACCATTCGTTTGTTCTATTGAAAATTGTGGTCGAAGTTTTGTAATGCCCGGGCTTTTAAATTCGCATGTAAAAAATGCCCACCCAGAATGTAAAGAAAGCAAAGTGAAAAAAACTCCTGCACGTCCAGTTAAAAGGAAAAGGAACAATCCAAAACCTCGCAACCCAGATATGGAATGTACAAACTCTTCTGATTACGTAATAACAGAAGTATATTCTGAAAGTGAATATTTAGATGATGGAGAGGGTGGTATTGTTATATTTGATGAAACAAATGCTGAGGAAGAAATTTTATTAGCAGAAGAAAATATGTATATAGATTAA
- Protein Sequence
- MKSNCLRCNVSLSNEYQLIFDETGIELQLDKLLAEHFEISVVRDSNTTQALCDECVNKLIELYDTQAYNEEKLELNENDESNHTVITTTTEVDIKDEAHNQDDEDMIIEEIQEEIENEVDFEELIEESTFTDNEEFYGFKETEENVDDFEMVPNPGGLSLQDYLSNVIKSDLERIDFDQNSICKLCEETLQSHNAVLMHILDNHQTQSEQYLCIFCDKQKHFDSITYLANHIVLNHYDLNSIMIYCTCPECNSRFSSFLEYNKHSCYKKNFGSRLQQECAECSKKFISNKRYRFHLQFHLKKQKPKACFICDILFSDENDYFEHIMFAHEKDDSFVCKKCDRVCTTKQLYENHMKLHDAIRSFHCPYCSKSYLYNQMLMNHIQQHHTDEQSNECKICKKSLANRHLLTRHMQLVHQQETESDVFVCLECGLIGISEEDTTFHADDEKCQGSEVSIECLKIAYACEFCELAFKSIENLKEHRLAHTDNLFKCYICDSTYTEYKKLKTHILTHNNIEPIQKSFPINRHYVCNFDSCEQSYLTWPSLRAHKVRHATKFTCEMCSQTFTTESKLNTHLKSHNNNEEYPCQFCSKLCGSQMSLSVHVARKHNNNCKTCPICNSTCNSEAALKEHIESQHTEVKCELCGKITKNKRNLAVHTQMIHNQVKRFFCSVCNKGYFNKSDLKSHERAVHAEANKFKCQYCNFSSSYETSFNAHLLKHEQNKPFKCEECSREFTRKACYKLHVLRHSDTKPFVCSIENCGRSFVMPGLLNSHVKNAHPECKESKVKKTPARPVKRKRNNPKPRNPDMECTNSSDYVITEVYSESEYLDDGEGGIVIFDETNAEEEILLAEENMYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664305;
- 90% Identity
- iTF_00427517;
- 80% Identity
- -