Dalb032616.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000680.1:81154-81639[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-07 0.0011 19.6 0.0 17 40 25 48 20 53 0.85 2 2 0.031 52 4.7 0.0 16 28 125 137 121 139 0.86
Sequence Information
- Coding Sequence
- ATGCCACGAAATTACACAAGGATGACACTGCGGGCATCATGGTCCGAAAAAGACATGAAAAAAAATAACACTTTGGGAGTGAATGAAGCAAGCAGGGAGTTCAACATACCATCCAGAACCCTGAGAAGACACATAATAGAGGGCAATGCAAATAAGTCGCTTGGTCGGTCAACTGCTCTTTCGTTGGAGCAAGAAAAGAGATTAGTTGCCCACATACAAAAATTGGAGAAACTTGGTTTTGCTCCTGACCGAAAAGATGTAAAAGAAATCGCTTATCAGTTCGGCGAACGTCTTGGATTAGCACACCGTTTCTCAAACTACACAAAGGCCACTGGTAATGTTTGGCTCAATGGTTTCTTGAAACGTAACCCAGAGATATCTACGAGGAAATCAGCCAGGGCTTATGGAATGAATCAAGTCGATGTTAAAGAGTTTTTCGACGTATTAAAAACTATATACCAAGATAATGATTTACAATATGGATGA
- Protein Sequence
- MPRNYTRMTLRASWSEKDMKKNNTLGVNEASREFNIPSRTLRRHIIEGNANKSLGRSTALSLEQEKRLVAHIQKLEKLGFAPDRKDVKEIAYQFGERLGLAHRFSNYTKATGNVWLNGFLKRNPEISTRKSARAYGMNQVDVKEFFDVLKTIYQDNDLQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -