Dalb034435.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010001015.1:53662-55362[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 2.4e-06 28.1 0.0 2 44 17 59 16 60 0.91 2 2 5.9 9.9e+03 -2.6 0.1 13 22 137 147 135 147 0.71
Sequence Information
- Coding Sequence
- ATGCCAAATATTCGTACAACTAATAAAGGTCTCCGTGGCAAATGGGATGAATCCAATTTAGTTGCTGCAATTCATGAAATTAAGACAAAAAACCTTTCAATAAATGCTGCTGCAAAGCAATACAAAGTTCCAGCTACTACCATCAGAAGGAGACTTAAAACAAACAACTGCAAGAAGAATGCCTTAGGTGCTCCTACAAGCCTGAATGCAGAAAGCGAACAAAAGATAGTTCAACATATTCTGAAACTTCAAGCACACGGATTTTCTCCGAACAGAAGAGAGCTATGCCGTATGGCTTTTGAATTAGCTGAAAAGGTAAATCCAGATCACAGTTTCAATAAAAATTCTGGGAAAGCGGGAAATGGATGGCTtttgctgtttttaaaacgtcatccggagctttctatacgtaagtctgaaggggtgtctatgtcgcgagcaaatggtatggccaaagaagaagtttcaacctattttcatttattagaagaaatttttcagttaaatgatttatttgacaagccttccaatatatttaacatggatgaaactggttgccaattgaataacaaacccgaatatgtcatagctgggaaaggttcgaaaaatgtcgctgcggtgacctcggctgaaaggggagaaacggtaacagtaattgcttgttgcaatgcggagggcagtttccttcctccagcttgtattttcaaggggaaaagaaagaagattgaatggagagaaggcatgccacctggctcaataatttatatgggtgaaaaatcagcttatataaacaaagaaattttctatttatggttgaaagaacatttcatcccacgaaagcctagtggcaaggttcttctgatacttgatggccactcatctcacactaacatggaaatgcttgaatatgccacacaaaatgatataatcctattttgccttcctcctcacactactcaatttcttcaACCTTTGGACCGGTCGTTTTTCAAACCATTGAAGTCATATTTTTTTGAGGCTTGTAATTTGTTTATTAGAACCAATCCTGATAAAAAAATCAACAGACTACAGTTTGGAAGGCTACTGGCTAGTGCTTGGGTCAAAGCAGCCACTTCCAAAAACGGAATTTCTGGTTTTAGTTCAACAGGAATTTATCCCTTCAATCCGGAAATAATACCGGACTACGCATTCATTGACCATCAAAACAAGCAAGTTGCTACTCTGGCAACTCCGCCAACCATTGAAATACCTACTATTGCAAGTCCAACTCAAGAAACAGCCAGCGATATAACACCTGGAAAAATGCTAAACATTATTTCCCCGGTGCCATCTTCTTCAAGGCGGGTGTTGAATAATACAAGAAAACAAAAAGCTAGAGTACTAACTTCGGTGGACACAAAATTGAACACTCAGAAGAAAAAGGCAAAAATCTCAAAAGAAAAGAAAAATAAGATAAAGCGGCGGCTTTTAAACTCATCGTCATCATCCGAGGAAGAAAATGTTGAAATCCAGCTAGTCgacgagtctgatgggcccgaagattttggagaaaatatttgcgccggttgttttgaagactatacgacaacaaccaaaaaagacgaatggatgcagtgcatcatttgtggtcagtggtctcacgacTCCTGCACTGCATTTAAAAATACCTGTGATGGATGTGGGCGTGCAAACAATAAATAA
- Protein Sequence
- MPNIRTTNKGLRGKWDESNLVAAIHEIKTKNLSINAAAKQYKVPATTIRRRLKTNNCKKNALGAPTSLNAESEQKIVQHILKLQAHGFSPNRRELCRMAFELAEKVNPDHSFNKNSGKAGNGWLLLFLKRHPELSIRKSEGVSMSRANGMAKEEVSTYFHLLEEIFQLNDLFDKPSNIFNMDETGCQLNNKPEYVIAGKGSKNVAAVTSAERGETVTVIACCNAEGSFLPPACIFKGKRKKIEWREGMPPGSIIYMGEKSAYINKEIFYLWLKEHFIPRKPSGKVLLILDGHSSHTNMEMLEYATQNDIILFCLPPHTTQFLQPLDRSFFKPLKSYFFEACNLFIRTNPDKKINRLQFGRLLASAWVKAATSKNGISGFSSTGIYPFNPEIIPDYAFIDHQNKQVATLATPPTIEIPTIASPTQETASDITPGKMLNIISPVPSSSRRVLNNTRKQKARVLTSVDTKLNTQKKKAKISKEKKNKIKRRLLNSSSSSEEENVEIQLVDESDGPEDFGENICAGCFEDYTTTTKKDEWMQCIICGQWSHDSCTAFKNTCDGCGRANNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188021;
- 90% Identity
- -
- 80% Identity
- -