Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.21 4.1e+02 2.5 0.0 30 40 57 67 56 71 0.82

2 8 0.21 4.1e+02 2.5 0.0 30 40 80 90 79 94 0.82

3 8 0.042 83 4.7 0.0 30 41 103 114 102 117 0.85

4 8 0.21 4.1e+02 2.5 0.0 30 40 126 136 125 140 0.82

5 8 0.21 4.1e+02 2.5 0.0 30 40 149 159 148 163 0.82

6 8 0.042 83 4.7 0.0 30 41 172 183 171 186 0.85

7 8 0.21 4.1e+02 2.5 0.0 30 40 195 205 194 209 0.82

8 8 0.2 3.8e+02 2.6 0.0 30 40 218 228 217 233 0.82

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.21	4.1e+02	2.5	30	40	57	67	56	71	0.82
2	8	0.21	4.1e+02	2.5	30	40	80	90	79	94	0.82
3	8	0.042	83	4.7	30	41	103	114	102	117	0.85
4	8	0.21	4.1e+02	2.5	30	40	126	136	125	140	0.82
5	8	0.21	4.1e+02	2.5	30	40	149	159	148	163	0.82
6	8	0.042	83	4.7	30	41	172	183	171	186	0.85
7	8	0.21	4.1e+02	2.5	30	40	195	205	194	209	0.82
8	8	0.2	3.8e+02	2.6	30	40	218	228	217	233	0.82

Coding Sequence: ATGACTGCGACTGTCCCGTGTTTAGCGGCAGTAGCAATAAAGGAAGGTTATTTCAATGGTCATGTAAATATAATCAGGTCCACATCTCGTGAGCGTCGCGACGCGCAGCTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTACACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTACACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTACACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGGCTGCGTCCACACTGTGGAGCAGTCCGCACCAGTCTCGAATGTTGTGACCACTGTGCGTCTGTACGCCTGTACGTCTGTACCGCTAGCTCAGCGATGGAACTTTAA
Protein Sequence: MTATVPCLAAVAIKEGYFNGHVNIIRSTSRERRDAQLWSRLRPHCGAGCVHTVEQAASTLWSRLRPHCGAGCVHTVEQAASTLWSRLRPHCGAGCVHTVEQAASTLWSRLRTHCGAGCVHTVEQAASTLWSRLRPHCGAGCVHTVEQAASTLWSRLRPHCGAGCVHTVEQAASTLWSRLRTHCGAGCVHTVEQAASTLWSRLRPHCGAGCVHTVEQAASTLWSRLRPHCGAVRTSLECCDHCASVRLYVCTASSAMEL

Sequence clustering based on sequence similarity using MMseqs2