Ddia012828.1
Basic Information
- Insect
- Dasypogon diadema
- Gene Symbol
- -
- Assembly
- GCA_006980735.1
- Location
- jcf7180002946645:46004-52283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.7 2.5e+02 2.2 0.3 2 21 245 264 244 267 0.89 2 19 1.1 72 3.9 5.5 1 19 309 327 309 330 0.92 3 19 0.4 27 5.2 1.4 3 23 342 362 340 362 0.87 4 19 0.0017 0.11 12.8 0.3 3 23 371 392 370 392 0.95 5 19 0.0017 0.12 12.7 1.3 3 23 400 420 398 420 0.94 6 19 0.00056 0.038 14.2 3.6 1 23 426 449 426 449 0.93 7 19 0.0015 0.1 12.9 0.2 1 23 455 477 455 477 0.97 8 19 2.6 1.7e+02 2.7 0.2 3 23 488 508 486 508 0.91 9 19 0.00026 0.018 15.3 0.4 1 23 524 546 524 546 0.98 10 19 0.02 1.4 9.3 5.5 1 23 551 573 551 573 0.96 11 19 9.7 6.5e+02 0.9 0.3 1 23 589 613 589 613 0.86 12 19 0.01 0.69 10.3 0.2 2 23 620 642 619 642 0.97 13 19 0.00018 0.012 15.8 1.0 1 23 647 670 647 670 0.96 14 19 0.00091 0.061 13.6 0.5 2 23 676 698 675 698 0.96 15 19 0.0048 0.32 11.3 0.1 2 23 702 724 701 724 0.95 16 19 2.2 1.5e+02 2.9 4.7 1 21 730 750 730 753 0.79 17 19 0.035 2.4 8.6 0.5 1 23 759 781 759 781 0.97 18 19 3.1e-06 0.00021 21.3 3.2 1 23 787 809 787 809 0.98 19 19 0.00046 0.031 14.5 0.3 2 23 816 840 815 840 0.95
Sequence Information
- Coding Sequence
- ATGTCCGGAAGAAGGAAAACACGGAATGCCTTAGATCAGCCCAAATGCATTCGTTGCTCTTGCGATTTGATAGAAGACTTCCAGTTAATTTTTGACGATACTGGTTTAGATTTAGAGCTTCAGAAATTATTGGGAATATGCTTTGATATAGATGTTAAAATTAGCCTGAGTGAGATTCAAGCTCTATGCGAAGATTGCCTTAATGAGCTTATCGATACTTATGATTTAATGCAGAGAAATGGGGGAAATAGTAAAGCTACGAAAAGTAGCCCCAAAGATAGTGATAATAAAACTGAGGTAAAATCGGTTGAGGATAGCGATTACTGCGAAATTCCAGATGATGAACTTCCCAAAAAAGGTGGGAATAGGGGGCGTAATAGCATCACCAAAAACCCGAAAAGCACAGACAATAAACAATTGGGAAGTAAAAAAGGCGGTAGACAAAGTACTTGTGCAGAAGTCAGCAACACAGAGAATGGCGAAAAGACAAAACTGGAAGTTCAGAGCCCCTGTAAATCTAAAGAAGCTGATGCTAGTACCAGCGGATTTTCCAACAAGAGCACACCTATGGAACTGGAACCTAAAGACGGCAAAGGTGAAGGAAGTGCTGGTGAAGATGTACTCCCTTACATTGATTACTTGGAAGAATTCGACGAAGAGTTTGATTTTAAGGAGTACAAAAGAAAAGTTCTTCAAAGTAAATTTCTGGATCTGTGTTTTCCTGAAGCGATTAAGTGTCGTTTGTGCTCGGAAGGTGTTGAAAATCATGTCGCTTTAGTAAAGCATACGGTAGACAAGCATTGTGGAGAAGACGCTACTTATCCTTGCATCATAGACGGTGAATGCGAGTCCGCTACGTCCGATGAAGATTTGTCGTTTCATTTAGTTTTTAAACATTACGACTTGGCTGCAATTGTAATATATTGTAAGTGTCCGGAATGCAAACGACTCTTCAATGATTTTCCATCTTTCAATAAACATTCTTGCTACCAGAAAACTATTGTTTCAAAAAGTAGGACTGACTGTGAACAATGCGGGGAATCATTCATGACCAATAAAAGATATCGATTTCATTTGCAATTCCATCTGGAGAAGCGACGTCCAAAAGCGTGTTTCATTTGCGACAAGCTTTTCAGAGATCAAGATGAATTCTTTGAGCATGTGATGTATAGTCATGAGAAAATTAAGGGTCATCTTTGTTTACGATGCGATCGAGTATTCAATTCAGCAAGCCTTTACAAGCAACATGTGAGTGTTCACGAAGCTAAACGTGCTTTCGCTTGCACCTTATGTTCTAGATCCTACCCATTCAAACATCACTTGAATAAGCATATGATTGCAAATCATGGTGCAGAAAGTTCGTATAAATGTAATATTTGTGAGCAATACTTCGTATCTGAGACGGTCCTTAATAATCACCTTCTGGCACACAATAAGCCTAAGCCAACTGAAGTAATTTGCTGTAATACATGCGGGTTTGTAGCTGAAAATGAAAAAGAGGCGGAGACCCACTTAGAAGAACATGGAGATGAAGACGTCCACACAGTTACTGAGATAATTGACAGAGCATATGTCTGTGAATTTTGTGAATTAGCTTATAACTCTATAGACAACCTTAATAAGCATCGAAATTCACATAGTAAAAAGGCATATTACTGCTGTATGTGCTCGGAATCATTTGAGAGGTACAAGGAATTAAGAACTCATAAATTTTCGCATCAAGATTATCCCGATAAAAGGAAATCCTTTCCAGTAGTAAGACATTATGCTTGCGATATACAGGGATGTACGAGAAACTATTTGCAAATGTTAGGCTTAAAAGCTCACAAAAGACAGCATCGTTCAAAGAAAACAGTGAAATGTCAAAAATGTAGGGGAATTTTTAATTCAATAGAAGAACTCGAAGATCACATGATGAAAATACATAACGGATTTAATTATGACTGCCACGTCTGTGACAAGACATATTCATCAAAAATAGCTCTAGGCTTGCACATTTCCAGAAAACACAGTATAAATAAACTTAAATGCGAATCATGTAGATACACCTACGTGACAAAGGAACAACTAGAGGCGCACAAGTCTACAGCGCACCAAGATCTAACCTGTGAGGTATGTGGCCTAATATTAAGAAATTTGCGAAATTATCAACTCCACTTAAGAGCCGTTCATAAAAAAGAAAAGAGGTACTTTTGTAAATATTGTAATAAGGGATTCTTCAAACACTGTGCCGTATTATATCACGAGCAAGCGGTACATCTGAAGGTGAAGAGATACAACTGTGAATTGTGTTCGTATAAAACTGCATACAGAGGAATGTATAATATGCACATGATGGCACACCGCAATGAAAACCCTTTCGTATGTAAAATCTGTGGGTCAAGTTTTCGGAAAAAATTTTCTTTAAAACAACACATGAAGCGCCACAACAACACAAAAGATCTCAAATGCCCGTATGAAGGTTGTAAATTAGCGTTCACTAAAAAAACAAACCTGACGCTACATGTTCAGTCAGAACATGGTGAAGGCGTTCCGATATCTTCTCATAAAAAAAGGACCGATGTTACACGTTCCTTCTTCGCTGTACCCCAATCAGATGTCTTTATTGACGACGATGATGGGTTAGATTTCAGCTCAGATGAGAAACAGCCAAAACTGAAAAAGATCAAAGAAGATTACACGGACGAGAGTGACACAGACGATACTAAAGAAAGTGTAAAAGATAACGATTCTTCACCAGCAGTAATTGTTAGAAAAAATTATAGCGACCACGATTACCTCGCTCACGATAGAACAGCGGATGCCTATGAAGAAGCTATGGATGATTATGGAATAGCGGAAGTTGAAGTAGAAACGAAATCCGAATAA
- Protein Sequence
- MSGRRKTRNALDQPKCIRCSCDLIEDFQLIFDDTGLDLELQKLLGICFDIDVKISLSEIQALCEDCLNELIDTYDLMQRNGGNSKATKSSPKDSDNKTEVKSVEDSDYCEIPDDELPKKGGNRGRNSITKNPKSTDNKQLGSKKGGRQSTCAEVSNTENGEKTKLEVQSPCKSKEADASTSGFSNKSTPMELEPKDGKGEGSAGEDVLPYIDYLEEFDEEFDFKEYKRKVLQSKFLDLCFPEAIKCRLCSEGVENHVALVKHTVDKHCGEDATYPCIIDGECESATSDEDLSFHLVFKHYDLAAIVIYCKCPECKRLFNDFPSFNKHSCYQKTIVSKSRTDCEQCGESFMTNKRYRFHLQFHLEKRRPKACFICDKLFRDQDEFFEHVMYSHEKIKGHLCLRCDRVFNSASLYKQHVSVHEAKRAFACTLCSRSYPFKHHLNKHMIANHGAESSYKCNICEQYFVSETVLNNHLLAHNKPKPTEVICCNTCGFVAENEKEAETHLEEHGDEDVHTVTEIIDRAYVCEFCELAYNSIDNLNKHRNSHSKKAYYCCMCSESFERYKELRTHKFSHQDYPDKRKSFPVVRHYACDIQGCTRNYLQMLGLKAHKRQHRSKKTVKCQKCRGIFNSIEELEDHMMKIHNGFNYDCHVCDKTYSSKIALGLHISRKHSINKLKCESCRYTYVTKEQLEAHKSTAHQDLTCEVCGLILRNLRNYQLHLRAVHKKEKRYFCKYCNKGFFKHCAVLYHEQAVHLKVKRYNCELCSYKTAYRGMYNMHMMAHRNENPFVCKICGSSFRKKFSLKQHMKRHNNTKDLKCPYEGCKLAFTKKTNLTLHVQSEHGEGVPISSHKKRTDVTRSFFAVPQSDVFIDDDDGLDFSSDEKQPKLKKIKEDYTDESDTDDTKESVKDNDSSPAVIVRKNYSDHDYLAHDRTADAYEEAMDDYGIAEVEVETKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -