Basic Information

Gene Symbol
hang_1
Assembly
GCA_006980735.1
Location
jcf7180002955725:24181-39414[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0015 0.1 12.9 0.9 3 23 258 279 257 279 0.95
2 22 0.0097 0.65 10.3 3.1 2 22 345 365 344 365 0.93
3 22 0.9 61 4.2 1.2 3 21 375 393 374 394 0.94
4 22 0.013 0.9 9.9 0.6 1 23 434 457 434 457 0.91
5 22 1.1 74 3.9 0.7 2 22 497 517 496 519 0.88
6 22 0.0025 0.17 12.2 1.7 2 23 564 586 563 586 0.95
7 22 0.00015 0.01 16.0 0.3 1 23 594 617 594 617 0.95
8 22 1.4 94 3.6 0.4 3 23 631 652 629 652 0.91
9 22 0.87 58 4.2 3.4 1 23 655 677 655 677 0.98
10 22 0.00062 0.042 14.1 1.8 2 23 739 760 738 760 0.97
11 22 9.2e-05 0.0062 16.7 4.3 2 23 803 825 802 826 0.95
12 22 0.0031 0.21 11.9 2.2 2 23 834 856 833 856 0.95
13 22 0.00044 0.03 14.6 0.1 1 23 869 892 869 892 0.95
14 22 0.00066 0.044 14.0 0.8 1 23 920 942 920 942 0.98
15 22 0.0013 0.085 13.1 0.9 1 23 950 973 950 973 0.96
16 22 3.2e-06 0.00022 21.3 1.2 2 23 981 1002 980 1002 0.97
17 22 0.00041 0.028 14.7 1.8 2 23 1050 1071 1049 1071 0.97
18 22 0.00015 0.01 16.1 0.4 1 23 1106 1128 1106 1128 0.97
19 22 2.7e-05 0.0018 18.4 1.8 1 23 1157 1180 1157 1180 0.91
20 22 0.096 6.5 7.2 0.2 2 23 1200 1221 1199 1221 0.92
21 22 0.0012 0.08 13.2 0.3 3 23 1235 1255 1235 1255 0.99
22 22 0.00034 0.023 14.9 1.4 1 23 1370 1392 1370 1392 0.97

Sequence Information

Coding Sequence
ATGACAGATGAATTAATTGTGCGTGCGCGACAAAACTGCTGTCGCTTGTGCTTGGCCCCGGACAGTGAGTGTGTTCCCATTTTTACCAGTTTCGCCGCCGATAAGGAGCCCCTTTCATCGAAAATTCATGCATGTGTCAACATCAAGGTTAGTTACGTGAGCGAATCCGATCGGTTGTCATCCCGAATATGCCATTCTTGCATAAGTTACTTGAACTCATGGCAGAGCTTCAAGAACCGATGCATAGCATCACAAATAAAACAGAGGAATTGGCTGGAAATGGCTAAAAAAACGGTCAAAAAACAATTTGATAACTTCAGAGCAGGCCGCAGCAATCAAACGAATGTCCCACCTGCCCCAAGCACGATTTCATCATCACCTTCGTCTGCATCCAAAAATAGGCCAATGCCTCTTCCGATAAAAATTAAGGAGGAACCTCAAGACGAAGACGAAATTCTTCCAAATGAGAAGCCACAAGATGTGCCGGAAGGTATGAAGGTTGACATCGATCCTACACAGTATTTAGCAAGAAATGAAGAGGAGGAGGAAGACGAACCGGAATTTCCATCTTCGTTACCTCCTAGAGCGGGACCGCAAATTTTAACTTCACTCGGATTAACGCATATTAACAGTGTGAATCCTTTTACTTTTTTGAGTACAGAATTGGGCAATGATACTGCTCCAGCCAGTGATGTTAATGATACAACTGAAAATACAGCAACCACATCAGTAATTGAACATGATCCAAGCGATCCAAATACTCTTCCATCCTGCCGTATATGTAAAGTTTCATTTTCGACACGGGCAAATGCAAAGCGGCATGAGCGTAATATACATGGTAAAGCATTCGACACATCAACGCCAAAACTTAATGTAAAACCAAATCTTCCAAAAGTATCCCCTCAAGTAACTCCTGAAATGATGGGAGTTTATGAATATCACAAACCTGAAAAATACCGGCATTTGTTAACCGAGCAGAAAATTTTGTTCATTCGGCGTAACGAAGAGTTTCTTAAACAGTATCAAAATTTGACATGTAAATGTTGTTCAAAGTCCTTCCCAACGTACAAAAATTTTATGGCGCATATGCGTAAGAAGTATGCAAATTTAGGTAGAAATTTGTGCTTCAAATGTTTGAAACAGTTTCAAACCAAAGCAATGTTTGTGTCTCATTTGAAAAAGCGAAATTGTATCAATTTGTACAAAGTTTACTTAAGTGATGATAATATTTCCAAGACAGGCCCTTTAGCCTTATCTCCTGACAAGATGGGTGCGAAAGAACTGCTAACCAACAAGGTCTACGAGTGCAAGATTTGTTCTAAGACGTCGCGTTTGAAAATGGAATTCAGAGCTCACGTTTATGAGGAACATTCTGAATTTCAAAAGAAAGATGTTCCACCTGGATCATGTGGTTTTTGTGGTTTGGAGATAGATGAGCCAGTGGAGAGAAAACGGCACTACAATAACATGGAGTGTATTGTTTTTCTGAGGTGCGTCACATGCGAGGAAAAATTCGACAGTCATCAGAAGTTTATAGAGCATGTTTATGGAGCACACTTGCCGCAGCATTTAGTAAATAATAACGAAGAAATTATTCAGGAGAGTAGTCTAGAGACTGTAGAAGAAATAAAGGAAGAAATCAATATACCTAAGATCGAGGGGAAAGTAAATGACCCTAAATTGCCACAAAGTTGCCAGATCTGTGGGCAACACTACAATAACTATAACAATGTACTTCGACACATGGAATCGAAACATCCCGATCAATTACCACCTACCTACAAATGTACAAAATGTGAGATGGGCTACCCAAGGTTGTCTATGCTTCGAAATCACATGTTAGATGCACATCAAAGTAAGTTACCAAAGCCGAAAAAGGAGGGGATATTTTGTCGAATGTGTTCTGAAACATTTGAGTTACGCGAAAAGTGGATCTCTCATCAATCTGATCAACATTCCCGTTACACATGCTGTCAGTGCAATTATCAGAATAAGAGTTTGGAAGAGTTTAAGAAGCATATTGAAATCCATCCCAGCTTGGCTTCAAGAAACATGAGCATTACAACATCAAATCGCTACGACTATGTAATGAAAGATTTACTGTCAATTACGAACGGTTGTCATGAGGGCGATAAGGACGACGAAGAAGAAGACAAACAAGTTAAGAAAGATTCACCTCCCGCAAAGAGACCTAGGACAGAGTCGGATTTTAAAGAATGTCAAATATGCCACACCTTCTTCAGTAGTAACTTGGGATTATCTAATCATATGAGAGCGCATAATGCTCAAGAGCAAGCGAAGCGCTCGAATCTGAGCGGAGCTAATGATATATCTTCTAGGACTGAGACAAATATAAAGTCAGAGCCTAAGAAAGAATTGGAACCTGATGCACGTTTCCGAAGAATGCGATGCCGCATTTGTCAAAGAAGATTCTCGACAAAGAAAAGCTACCGTCGACATATGTTAGTTGATCATCACGTTAAGAATGTACCTTTCATTAGATGTCAAGTTTGTCATGCGGAATTTACCCATGAAAAAGGTCTTAAGGTTCACATGTTTAAGGCACATGGAACTATACTGACCGATGAGAATATTGAGGTACAATTTGAATGTGATGTGTGCTCAACAGTTTACAGAAATGAGGAACAACTTAATGCACATAAGATATCTGTGCATGGAAATGAGGATGAGGAAATGGAGGATAGCGCTCCACCTACTCCCGCTCAAGTACCAGTTTCAAGTGCACCGAAATATTGGTTCCAATGCCGTTATTGTCCATCCAATTTTGATACGAATAAGAAACTTGCGATTCATATCAATTCTCATGAGGAATTTGATTCGAATGACTATTCCTGCAAAGATTGTGGAAATGTGTACAGTGGACGCAAAAGTCTGTGGGTGCACAGGTACAAAAAGCATCCTCTAATCGCAGATCCATCACCGTGTAATATTTGTAATAAAACCTTTTTTGATAAGAAGATGTTAGAATTGCATATGAAAACACATAACATAAAATCACAAAATAATGATAGTTTAAAAAATACAACTGCCAGCCAGAGAGATTCTCAAAATCATTCTGGCGACGATGAAGGGGGTAATCATGACAAAAATGTCGATAAGAAAGTAATTGATATTCTGCCACAAGTAAGCTGTTCAGTATGTAGCGAGAAGTTCAGCGATCACGAACTTTTCAGTAAACACATGCAAATGCATGAAAATGAGCTGTACACTGATAATCCATTGGCTGCGATGTTTGATACTGGGCCGGAAGATCCCAATCGATTCTTTATGAGCAGAATGGGAGAGGATGGAACCTACATTTGTGATCTGTGTCCGAAGAGTTTTCCTCACATCACTGCATTAAAAGTGCACAGAAATTGGCATTTCAGAAGCGATAGTAAGCAGGTTACAGCTGATCCTAATGCGATATGGAGAGGGAACACGAAGAAAAAAAAGAATGCATCCACGCACCGATGTCAGTATTGTAATTCAACATTTGTTAGCAGTAGTAACCTCCGGCGGCACATTGGAGAATTGCACAAGCGGGAGGTAGCAAATGGAGTAGAACCACCGCAAATATTTATTGAAAAGTACCTTGAGTGTCAAAAGTGTAGTATGAAATTTGAAACTAGAGCCGAATGGATAGACCATAAAATAGATCACGTAAAATCATCAAGACATGATGCAACCTTCGAATGGGGATGTGAGATTTGTGGGAAATTGGTTTCACGTAAAGAACGACTTGTACAACATATGAACTCTCATTTGAGAGAGGATGAACCTAACGGAAATATAAGCAGTGGCGAACCACTTAACAGTGAAGCTGGTTTTGAAAGTAATTCCCAAGATTCTGCTACATCTAGTAACGATCAGCATTCCTCTAAAAATATTAACGAGCCAGTTAGTAATGAAAAGGAGAATGCAGTTGGGCAAAGTGCTGCTAATGATGATAACGAAAATGACGATGAGGACGGTGATGATGAGGATGATGAATTAAGTGCGCTTAATTCGTCCACTTCAGATGAAGATCAGAATGACGATTCCGAATCAGAAGATAGTTCAAGTGAGCACGACGAAGACGAGGAAGATGATGAAAGCTCAGGACCTTACTCCTGTGATTTATGTCAACTTTTCTTTGAATCATCAAAGCAATTGCAACGACACGTGACTAGTCATTTCTTAAATGGACCTGGATCAGTTACATTAACTGAATTATCCAAAGAGAAGAAAATGCCAATGGATAATACTATGCGGGCGAACACTTCAACCTAG
Protein Sequence
MTDELIVRARQNCCRLCLAPDSECVPIFTSFAADKEPLSSKIHACVNIKVSYVSESDRLSSRICHSCISYLNSWQSFKNRCIASQIKQRNWLEMAKKTVKKQFDNFRAGRSNQTNVPPAPSTISSSPSSASKNRPMPLPIKIKEEPQDEDEILPNEKPQDVPEGMKVDIDPTQYLARNEEEEEDEPEFPSSLPPRAGPQILTSLGLTHINSVNPFTFLSTELGNDTAPASDVNDTTENTATTSVIEHDPSDPNTLPSCRICKVSFSTRANAKRHERNIHGKAFDTSTPKLNVKPNLPKVSPQVTPEMMGVYEYHKPEKYRHLLTEQKILFIRRNEEFLKQYQNLTCKCCSKSFPTYKNFMAHMRKKYANLGRNLCFKCLKQFQTKAMFVSHLKKRNCINLYKVYLSDDNISKTGPLALSPDKMGAKELLTNKVYECKICSKTSRLKMEFRAHVYEEHSEFQKKDVPPGSCGFCGLEIDEPVERKRHYNNMECIVFLRCVTCEEKFDSHQKFIEHVYGAHLPQHLVNNNEEIIQESSLETVEEIKEEINIPKIEGKVNDPKLPQSCQICGQHYNNYNNVLRHMESKHPDQLPPTYKCTKCEMGYPRLSMLRNHMLDAHQSKLPKPKKEGIFCRMCSETFELREKWISHQSDQHSRYTCCQCNYQNKSLEEFKKHIEIHPSLASRNMSITTSNRYDYVMKDLLSITNGCHEGDKDDEEEDKQVKKDSPPAKRPRTESDFKECQICHTFFSSNLGLSNHMRAHNAQEQAKRSNLSGANDISSRTETNIKSEPKKELEPDARFRRMRCRICQRRFSTKKSYRRHMLVDHHVKNVPFIRCQVCHAEFTHEKGLKVHMFKAHGTILTDENIEVQFECDVCSTVYRNEEQLNAHKISVHGNEDEEMEDSAPPTPAQVPVSSAPKYWFQCRYCPSNFDTNKKLAIHINSHEEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPLIADPSPCNICNKTFFDKKMLELHMKTHNIKSQNNDSLKNTTASQRDSQNHSGDDEGGNHDKNVDKKVIDILPQVSCSVCSEKFSDHELFSKHMQMHENELYTDNPLAAMFDTGPEDPNRFFMSRMGEDGTYICDLCPKSFPHITALKVHRNWHFRSDSKQVTADPNAIWRGNTKKKKNASTHRCQYCNSTFVSSSNLRRHIGELHKREVANGVEPPQIFIEKYLECQKCSMKFETRAEWIDHKIDHVKSSRHDATFEWGCEICGKLVSRKERLVQHMNSHLREDEPNGNISSGEPLNSEAGFESNSQDSATSSNDQHSSKNINEPVSNEKENAVGQSAANDDNENDDEDGDDEDDELSALNSSTSDEDQNDDSESEDSSSEHDEDEEDDESSGPYSCDLCQLFFESSKQLQRHVTSHFLNGPGSVTLTELSKEKKMPMDNTMRANTST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-