Ddia014736.1
Basic Information
- Insect
- Dasypogon diadema
- Gene Symbol
- -
- Assembly
- GCA_006980735.1
- Location
- jcf7180002938467:4-9813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6e-05 0.0011 19.1 1.6 1 23 6 28 6 28 0.98 2 18 0.0043 0.29 11.5 0.1 2 23 35 56 34 56 0.97 3 18 2.8e-05 0.0019 18.4 1.8 1 23 62 84 62 84 0.98 4 18 0.0089 0.6 10.5 0.9 1 23 90 113 90 113 0.96 5 18 0.03 2 8.8 0.1 2 17 120 135 120 136 0.89 6 18 8.1e-05 0.0055 16.9 3.1 1 23 246 268 246 269 0.96 7 18 1.7 1.1e+02 3.3 1.7 1 11 272 282 272 285 0.91 8 18 0.0054 0.36 11.1 0.2 1 19 341 359 341 359 0.97 9 18 1.1e-07 7.1e-06 26.0 4.6 1 23 465 487 465 487 0.98 10 18 1.5e-05 0.001 19.2 6.4 1 23 493 515 493 515 0.97 11 18 5.3e-05 0.0035 17.5 2.6 1 23 521 544 521 544 0.91 12 18 4.7e-06 0.00032 20.8 0.7 3 23 556 576 555 576 0.98 13 18 2.4e-05 0.0016 18.6 0.4 2 23 582 603 581 603 0.97 14 18 1.9e-06 0.00013 22.0 0.3 1 23 610 632 610 632 0.96 15 18 1.7e-06 0.00012 22.2 0.7 1 23 638 660 638 660 0.98 16 18 7.5e-07 5e-05 23.3 0.7 3 23 668 688 666 688 0.96 17 18 1.1e-06 7.2e-05 22.8 1.2 1 23 694 716 694 716 0.99 18 18 0.00099 0.067 13.5 1.2 1 23 721 744 721 744 0.97
Sequence Information
- Coding Sequence
- ATGGGTCTTCCACGTTATAGCTGTGATATTTGCGGTAAAGGTTTTAAGGAAAAAAATAAATTTGAATATCACATGAAAAATCACAAGGGTGAACGTGATTGGAAATGTTCTGTTTGTGAGAAAGCTTTCCTTATTGAATGGGATCTAGAGTTACATATGCGAACTCATACCGATTACAGACCGTATGTTTGCGAAATTTGTGGTAAAGCATTTCGTGTTATCTGCCATTTAACAGAACATCGTGAAACACATAATGATACCAATACTTTTGAATGTACAATATGTGGTTCCAAATTACATACTAGAAAAACTCTTAGGGGACACATGGCGAGTGCGCATAGAATGGGAAAAATCAGATATTGTCCTGTGTGTGATCAATCGTTTGTACGAAACCATCGACTGAAGATTTGTCGTACATGTTTACGAATTGATACCGATGAGAATCTCCACAATCTTTTTCCCAAAGATGAAACTGCATCTGAAGAGGATACTCCTGTCCGGGATATGATATCAGAGTGCTCCAATTATCTGGTTGCAGAAGAAGATGATTACCCAAAACAAGTGTGCAAAAAGTGTATAGAAGATTGTGAAAAGTCCCAGCAAATTCTAACTGCAATAATTGAGAAATGTGGAAAAGATCCGCATAGCAACAGTAGTTTTTTGGAATCGATTTTTGTCACTGAGCTGTACGTGAAATCTGAGGAAACCGGAACACAAACTGAAGTTCTGCTGGTATATCCGTGTGAAAAATGCCCAGAAAAATTTTTCACATTCGAAAGTTTAAAGAAACACATCAAGAATCACCATGAGGAATTCAAATGTCGAGTATGCTCAAAGACGTACACAAAAATCAAAGGAGGATTGGAAACAGGATCTTCGACAGAATGTTCCGAGTATCTGCTAACAGACGATGGTGTATGTAAATCTTGCAATGATTTTTACGCTCAATCAAATGAATTGAATCACTTCAAAGACTACGAGGACGATGAGAATAAGGATGGCTCCGATATACCTTGGCAGTACATGTGCGCTGTATGTAATCAGACTTTTTCATCAGATGAATCTCTCAAAAGCCATCCGTGCTATCAGGAGGAAAATAGTCACACGTCTATAAAGTCTGAAAAGTCTGGGGCTGAATCAAACGCAGAGGAAGGACAAAATCCTTTGGCGGAGGCGGAACATTACAGTTTGTCGAGTAAAATGGGGAATTCGGATACAGAGTCTTTTTACGGTGATGATGGAGGTGATCAAGGCGAATGTTCCAGTGCAGAAGGTGATGCCTTACTCACAGAAATGCAAGGTAAAGAGGATAACTCAGACGAACCAAATAATAAAAAGAGTAAAAACACAACCGGTAAGAAATATAAGACAGTCAGAAAAAGAGGAAAACCCCACAAATGTGATGTATGTGATAAAGTATTTTCAAGATCGACCCACCTAAGAAGACACATTCTGACGCATTCAGACGAGAGACCATACTCCTGTAAGATATGCAACAAAGGTTTCACACGATTGGATCACTTGAATGTGCACATGCATCATCATTCTGATACAAAACCGCACGTGTGTGACATTTGCAAACGGGGTTTCACTAGAGCCGAGCACCTCAGAAAACACAAGGAGGCACGACATGGTAATAAAGTGAAAACACCAAAAACGGAATTTTGTGAAATCTGTAAAAAAGGATTCACCACTGCTAAATATCTGCTAATTCACATGAGGAGCCATACTGATCGCATTTGGTCGTGTAAAGTGTGTCCAGAGAAATTCAAAACAAAGCCGGAACTGACGGCCCATTCGAAAACACATGCTGCCAACGAAAAGCCTTATCTATGTTCAGAATGTGGACTCCGTTTTGTACGCAACGACTATTTGGTGATACACATGAGACGGCACAAAGGAGAGAAGCCGTACAAATGTAAATTCTGTGGAAAGGGCTTCCCCCGAGCTACCGATTTAACAGTGCATGAAAGATATCACACGGGCGAAAAGACACATCTTTGTACAATTTGTGGGAAGGGTTTTCAACGTGCCTACAATTTGCTGGTTCATATGAGGGTGCATACGGGCGAACGACCCTACGAATGTCCACATTGCACGAAACGTTTTGCCCAGGGAAACGATTTAAAAGCCCACATTCGTCGGCATACAGGAGAGCGATTCAAGTGTGATATTTGTGGGGATGGTTTCATACAAGGATATCACCTCACCCAGCACAAACGGAATCTACACGGTATTGACATGAAATCACATATTCGTCGAGTAGAAAAGTACGTAACACCAGTCGAGCAGCAAAAACAAATGGAGGCGATGCAAAGTCAACTCAGGCAGCAGATCCCCTCTAAAAGTCAAAGCAATCAACCCGAACTGAAAGAGATCGATAAAAAGGAAACTCTACTGACAGAAGTGGACGTGATTAAAATTGAAGAGGATCAAATGGACGTAACGGAGGCAATCAGTTTAAGTGAGGAGCAAACGAAAATGCTGGAAAGCGGTCAACAAATTACAGTTGTGGATGGAACCAATGTCACAATGATATCCTATTTCAATCCATCAGAGGAAAAAGTAAAATATGATTCAGCAAACGAATAG
- Protein Sequence
- MGLPRYSCDICGKGFKEKNKFEYHMKNHKGERDWKCSVCEKAFLIEWDLELHMRTHTDYRPYVCEICGKAFRVICHLTEHRETHNDTNTFECTICGSKLHTRKTLRGHMASAHRMGKIRYCPVCDQSFVRNHRLKICRTCLRIDTDENLHNLFPKDETASEEDTPVRDMISECSNYLVAEEDDYPKQVCKKCIEDCEKSQQILTAIIEKCGKDPHSNSSFLESIFVTELYVKSEETGTQTEVLLVYPCEKCPEKFFTFESLKKHIKNHHEEFKCRVCSKTYTKIKGGLETGSSTECSEYLLTDDGVCKSCNDFYAQSNELNHFKDYEDDENKDGSDIPWQYMCAVCNQTFSSDESLKSHPCYQEENSHTSIKSEKSGAESNAEEGQNPLAEAEHYSLSSKMGNSDTESFYGDDGGDQGECSSAEGDALLTEMQGKEDNSDEPNNKKSKNTTGKKYKTVRKRGKPHKCDVCDKVFSRSTHLRRHILTHSDERPYSCKICNKGFTRLDHLNVHMHHHSDTKPHVCDICKRGFTRAEHLRKHKEARHGNKVKTPKTEFCEICKKGFTTAKYLLIHMRSHTDRIWSCKVCPEKFKTKPELTAHSKTHAANEKPYLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYECPHCTKRFAQGNDLKAHIRRHTGERFKCDICGDGFIQGYHLTQHKRNLHGIDMKSHIRRVEKYVTPVEQQKQMEAMQSQLRQQIPSKSQSNQPELKEIDKKETLLTEVDVIKIEEDQMDVTEAISLSEEQTKMLESGQQITVVDGTNVTMISYFNPSEEKVKYDSANE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -