Basic Information

Gene Symbol
ARID5B_1
Assembly
GCA_006980735.1
Location
jcf7180002948774:10017-17132[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.6e-15 5.5e-12 45.7 0.3 2 89 294 374 293 374 0.90
2 2 7 1.5e+04 -4.0 0.1 47 65 431 449 429 457 0.67

Sequence Information

Coding Sequence
GATGAAGTTGTCGCAATCTCTGATAAAGTTGTTATACGCGCTGAAGATTTACTAAATTGGTTTGACGATAAGCTGGAATGGAACTGGGGTCTCGTGTGGAAACGGTCGGAAGGAATTACAAAAGGAAGAAGTGAAAATCAAAACACAGAAGTGGTGGGCGCAAACAATACGATTTCATTGAAAAATTCCCAGATCGACTTCTCTGATGTGGAAAAAGAAAAACACTCAGATGAAAACATGCGAACAAAGATTACAGTCTTGAGCTATCCCAGATACTGCAGGTATAGAGCAACACTAAAACGTCTAGAAGAGGATTACTGTGATGAGTGGTTAAAGAATTCCATTGTGGCAGCATTGTGCGGCTTTTCATCGCCATCATCGGATATGCGTGTAATGTTCTGTCGCGATACATTCGATTATCCAGAGCTAGAAACTCACGAATTGCTGTGCAATCATCTGGCACCAAAATTGAAAGGACGTCCTCGCGGACGGAAAAAGAAATGCAGATCAGAGTCACCTTTCTCCAATGGCAAAAAGCTTCTTGACTCTGGTAGCGAATCAAATGATTCCGATATTTCGATATTTTCGATAGGAAAGACTACCATTAAAGTTGAACCTCGCTCACATCTACGGTTCAATCACAGACCAGCGAGGGGTAAAGTTAAGCCTGAACAAGAATATAAACCTCATAAGAAATTAGAATTGAAGAAGGAAGAAGAAAAGGAGCCAGTTGTTGTAGAGAAAAAACCTAAAGACGTGATAAATAAGAAGAGCCCTGAAAAGAAGCACTTCTTAAAGGCAAAATGTATTGAAAAGCCTGCAAATCTGCAAAAACCACTGCCTCCTAATAAGCCCACTTGTAACAACTGTCCCCCAGAGGAGAAGTTCTTCTTGCGCAAACTGCACGAATTTCACATCAAGCAGAACAATAACATACCAAAGATGATCTGGGTGAGTTTGAAAGGAGTGCACTTGTATGCGATATTCCGGCAAGTGAAAAAGCTTGGCGGCTACGATGCGGTTACATTGAAGAAACAGTGGAAAACCTTATTTGGCGAGAACAGTACTCCTCATCATACCATAACACGACGGAAATATGAGCGCATTCTACTGCCTTTAGAGAGATCAGAATTAGTGACTAAAAAGACAACGAAACCCGAAGTTAAAAAGGAACCTGTTGAGGCTCCAGAAAAACCTCTTAAAGTTCCTACCCTGAAAGTTACAATAAAGAAAGAAAGAAGTCCGGAGCCTGAAATAAAATCTGAGCCAGAATTGACAAAAGAAGAAATGGATGAGATACAAAAGAAAGTGAAAGCAAAACAAGTGGCACAGGAGGCCCAACCAACGAGCAATTGTAGCGAGGATGTTAAGCCTGTACTGGTGGATAATCCAGTTCTAACGATTCCAGTTGTTTCCACTGCCGAGAACAAAATCTCTGTGTCTTCAAGTAGTGTTCAGCCGGTGTCGGTACCAGTTACAGTAATTGTAGGGACTGCGGATGCTGCAAAGCCCACTACAATGGAGGAGGACATAAAACCAATAATATCGTCCTCGTCATCGTCATCAACAACAAAAACAACTGTTTCTACTTCTTCATCGCAAAAGATTGAGATACAGCAGCCGCATACGACAATTACAGTTCATCAGACTACAATACACCCCCAGACGCATTCCAAAATAACCGCACAGAATCAGATCACGAATCAGATACAGATTACGAATCAGATTCAAATTCAACAAATTACAGTGCAGCCCAATCAGAGTGATAAATCTTCGTCAGGATGTAAGGGAAGTGAGTTCCGTTGCAATATTAAGCAGGATAAGGACGGGCAAGAGGTTAAAATTGAGAACCGGGAGGCGGTTAGTCCGCAGCGCAGAGAAGATGATTTCAAGCGTCAGCGGCAGAACGTTCGAGTCAAGACTGAGAAAATTCCTTTCGAGAAAGAAAATATTCCGTTCATAGCGGCCGGTACGACCATCACACCTGTGATATCCCAAGTGACCGCTCCAAAAAAATCCCCCGAAGTAATTGATCTCGTCGACAGTGATGGCGACGGCTCATCCTCGTCGGGAAGCTCCTTGGCAAATCACATGAGACTGACCTGTATGCCAGAAAGCACAATTGTTCCACCTGTTAAAAAGAGAAAACTGGACATTCTTCGAGAAGGTGGTTTAGAAGTGACTGCTATTAGCAACACCCATGGAGTTATATCCACATCATCTTCACTTCCTCCTGTCTCCCTCCGTGTTCCATCTCGGGTGCCAGTAAAACCTGAACGATGTCCGGAGGAGAACAAATTTAACCTTCCGCCATCTACAAGTATAACAATCCCTAGACCTGGAGGCGGTGCTAGCATACCTAAAATATCTGCCAACAGTATGTATACAAAAACGGGAAAAATATTTGGGAATCCCAAGGATATTTTGCCGCCAGCACCTACTCCTTCCGGACCATGTGAAGTTCTAGATCTGACTGTGAAATCACCACTCAAGTTTCCTTCCTTGGAGATCCACGCGATACCTTCAGCACGACGTACGAGATCACCTCCCCTAACCAAACCTTCGGTATCTGCAATAAATTTATCCAACTCGAAGTCGAAACTTTCCGACTCGGGGTTGCAGATCACACTGGTACCATCACAGCCGCAACAGAAAACGTTGACACATACACAAAACGTGTACAATTCCCAAAATCACAACATTAAGCGAAAAGCTGTTGATATTATGCCGGCACCAATACCCCCACCATTACCACGGCAAGTTTCGAAGCAGCACCTGACTCCACCCAAAATTGAGAAAAAAGTCAGCTCACCTCCGGCTCAAGGGGGATCACCGAAACCTGCATTACCAATCACATCAAACCTACCTGGTTCAAAAGCACCGGCATTCCCCTTCCCACCCTTCCTGCCTCATTTAGCCGCTGCGGCACCCAATCCTTTTCTGCCCATGCTCAATCCTGTCCTACTTTCCAGCTTGTACGCTCAAACACCTAACCTATTTTTACCAAATCAAATCCCTCAGGAATTGTTACAGTTATACAAGAACCTGCCGGCCGAAATGGGAATGGTGCCCATCTCCAAGAGTTAA
Protein Sequence
DEVVAISDKVVIRAEDLLNWFDDKLEWNWGLVWKRSEGITKGRSENQNTEVVGANNTISLKNSQIDFSDVEKEKHSDENMRTKITVLSYPRYCRYRATLKRLEEDYCDEWLKNSIVAALCGFSSPSSDMRVMFCRDTFDYPELETHELLCNHLAPKLKGRPRGRKKKCRSESPFSNGKKLLDSGSESNDSDISIFSIGKTTIKVEPRSHLRFNHRPARGKVKPEQEYKPHKKLELKKEEEKEPVVVEKKPKDVINKKSPEKKHFLKAKCIEKPANLQKPLPPNKPTCNNCPPEEKFFLRKLHEFHIKQNNNIPKMIWVSLKGVHLYAIFRQVKKLGGYDAVTLKKQWKTLFGENSTPHHTITRRKYERILLPLERSELVTKKTTKPEVKKEPVEAPEKPLKVPTLKVTIKKERSPEPEIKSEPELTKEEMDEIQKKVKAKQVAQEAQPTSNCSEDVKPVLVDNPVLTIPVVSTAENKISVSSSSVQPVSVPVTVIVGTADAAKPTTMEEDIKPIISSSSSSSTTKTTVSTSSSQKIEIQQPHTTITVHQTTIHPQTHSKITAQNQITNQIQITNQIQIQQITVQPNQSDKSSSGCKGSEFRCNIKQDKDGQEVKIENREAVSPQRREDDFKRQRQNVRVKTEKIPFEKENIPFIAAGTTITPVISQVTAPKKSPEVIDLVDSDGDGSSSSGSSLANHMRLTCMPESTIVPPVKKRKLDILREGGLEVTAISNTHGVISTSSSLPPVSLRVPSRVPVKPERCPEENKFNLPPSTSITIPRPGGGASIPKISANSMYTKTGKIFGNPKDILPPAPTPSGPCEVLDLTVKSPLKFPSLEIHAIPSARRTRSPPLTKPSVSAINLSNSKSKLSDSGLQITLVPSQPQQKTLTHTQNVYNSQNHNIKRKAVDIMPAPIPPPLPRQVSKQHLTPPKIEKKVSSPPAQGGSPKPALPITSNLPGSKAPAFPFPPFLPHLAAAAPNPFLPMLNPVLLSSLYAQTPNLFLPNQIPQELLQLYKNLPAEMGMVPISKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-