Dhel025805.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053334.1:19938480-19945024[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0022 0.3 12.6 4.2 1 23 39 62 39 62 0.95 2 20 0.062 8.4 8.0 3.4 1 23 69 92 69 92 0.92 3 20 9.8 1.3e+03 1.1 0.3 13 23 95 106 94 106 0.85 4 20 0.08 11 7.7 2.8 1 23 111 134 111 134 0.94 5 20 2.2 2.9e+02 3.2 3.8 1 21 140 160 140 161 0.94 6 20 0.0082 1.1 10.8 0.6 1 23 189 212 189 212 0.94 7 20 1 1.3e+02 4.2 0.7 1 23 218 241 218 241 0.86 8 20 0.00096 0.13 13.7 3.7 1 23 246 269 246 269 0.95 9 20 0.051 6.9 8.3 1.7 1 23 279 302 279 302 0.94 10 20 4.3 5.8e+02 2.2 0.9 1 23 308 330 308 330 0.87 11 20 0.071 9.6 7.9 0.2 2 21 333 352 332 355 0.89 12 20 1.2 1.7e+02 4.0 0.5 2 23 357 379 356 379 0.92 13 20 0.00027 0.036 15.5 4.2 2 23 385 407 384 407 0.96 14 20 4.6 6.2e+02 2.2 3.9 1 16 413 428 413 430 0.89 15 20 0.014 1.9 10.1 1.5 1 23 531 554 531 554 0.97 16 20 0.00093 0.12 13.8 2.7 1 23 560 582 560 582 0.98 17 20 0.039 5.2 8.7 0.2 2 23 585 607 584 607 0.92 18 20 8.7 1.2e+03 1.3 3.2 1 23 622 645 622 645 0.91 19 20 0.014 1.8 10.1 2.6 1 23 651 674 651 674 0.95 20 20 0.015 2.1 10.0 1.9 2 23 681 703 680 703 0.96
Sequence Information
- Coding Sequence
- ATGGCATCCACCTTAAAAAGGAAACGTACTCGTGCCCCGACTGCAGCTATACAACTCTGTATAAACCCAACTATGTGGATTCACAAAAAGCGGAAGCATGTAGGAGAAATTTGCTTTAACTGCGACAAGTGCGACTACAAATCGAAAACAAAAGAATGCCTCAAACGCCACGTAAACAATATTCATGCGAATCACGGCTTCAAGCACAAATGTCGGTTTTGCGACTATGTGACCAAAGACAAAAGGCACCTGGATATGCACGAGAATGGTATtcatcttaaaaaaaAATACCTCAAGCGCCACATAAACGCGATTCATGAATCGCAAATATTCCATTGCGAATACTGCGATTATGCAACGAATCGAATGGACTGTGTCAAGAAGCACGTTAATGGAGTTCACTTGAAAAACTATCAATATAAATGCGACAGTTGCAGCTTTCAATGCGTGGAAGAAAACAACTTGAAGCATCACAAGTCTACGGATTGTAAGACGTCCAAATGCGATTACATCGAAATAAAGATAGAAGAGCCTTTAGCGCCTAGAATCGCGAATTACAACATTTATAAATGTCAGTTTTGCGACTATGTGGCTAAAAACAAAACGTTTTTGAATATACACGAGAATGGCATTCATCTGAAAAAAGTAAGGTACTCGTGTCCCGACTGCAGCTATACAGCTCTATACAAATCTAGCATAACTATccataaaaaactgaaacacgAAGAAAACTACTTCAACTGCGACAAGTGCGACTTTAAAACGAAGACCAAAGGATGCCTCAAACGCCACATAAAGGCGATTCACCCCACGTTAgatgaaaaattacaaatattccaTTGCGAACACTGCGATTACACAGCAAAGCAAATGTACGCCGTCAAGATGCACATTAACGGAGTTCACCTGAAAAACTATCCATATAAGTGCGACCTTTGCAGCTTTCGATCTCTAGTTAAACTCGGCTTGGAGCGTCACAAGTCgacgcattttaaaaaatgcaaatactGCGATTTTGTCGGGATAGATAAAAAAGCGCTTTCGGCGCATAGCATCGCGAATCACAGTAAATGCCGGTTTTGTGATTATACGAACGAACGCAAAGTGCTTTTGGAAAATCATGAAAATGCCATGCATCTTAAAGAACCAATACGCTGCGATCATTGCGATTACACGTGTACCACTAAACCGAAGTTGACAGCGCACTTACGCCAGAATCATGCGCTTGTTGAGAGGTTTAAATGCGAAAAGTGCGACTTCGCATGCAAAGAGAGAAAGAATTTCAGTAATGGACATGCAGAAGAACCgatggtaaaaattaaagagGAGCCCACTGATAATCTAGATAATTCCCAAATTAATATCCAAGATGGAGTTGAACTAGTCCCCCttgtcgagtttaaaattgaacaaGATGATCCACCAGGTCCAATAGAATTAAAAGTTGAAGGAAAAGTAGAAACAGAAGAACCTGCAGATGATGAGAATATACTTGAAATATcattaaaaaccgaaattgatagTGCAAACAATCAGAAGCAAAGACAACCGAATGTCCCAGATACCCAGGATAGCAGCAAGTCAAATTTATTCCATTGTGCGTTCTGTAATTATACAGCGAAGATAAGTGGCAACCTCAAGACTCACATTAACAGAATCCACTTAAAATATCGACCATATAAATGCGACGTTTGCAGCTATGAATGTGTACAAAAGTTCGACTTGGAGCGTCATAAGTTGTCTCATTTTAAAAAGTGCAGATACTGCGACTATGTCGGGATAAATCAAAAAGCGCTTTCGGTGCATAGAATCGCGAATCACAGTACAGGCACTGAGAACGCCATCCATCTTAAAAAAGAGAAGTACTCGTGTTCCATTTGCAGCTATACGTCTCTGTACAAATGCAGCGTAGATACACATATGAGACTGAAACATAATCAGAAAATGTATTTCAACTGCGATAAGTGCGATCACAAAGCAAAAACGCACAGAAGCCTTCAAATTCACATAAATGCGATTCACACAAAGTCGGAATTAGTTTACTGCGCCCATTGCAGTTACACGTCTACTTTCAAGAGGCTTTTGGCGGTGCATTTACGTAAGAATCATTCGCTTATCGATGCGTTTAAATGCGAAAAGTGCGACTTTTGCGTCCTAAGGAGAGGATCGAGCTGGAGAGACATGTGA
- Protein Sequence
- MASTLKRKRTRAPTAAIQLCINPTMWIHKKRKHVGEICFNCDKCDYKSKTKECLKRHVNNIHANHGFKHKCRFCDYVTKDKRHLDMHENGIHLKKKYLKRHINAIHESQIFHCEYCDYATNRMDCVKKHVNGVHLKNYQYKCDSCSFQCVEENNLKHHKSTDCKTSKCDYIEIKIEEPLAPRIANYNIYKCQFCDYVAKNKTFLNIHENGIHLKKVRYSCPDCSYTALYKSSITIHKKLKHEENYFNCDKCDFKTKTKGCLKRHIKAIHPTLDEKLQIFHCEHCDYTAKQMYAVKMHINGVHLKNYPYKCDLCSFRSLVKLGLERHKSTHFKKCKYCDFVGIDKKALSAHSIANHSKCRFCDYTNERKVLLENHENAMHLKEPIRCDHCDYTCTTKPKLTAHLRQNHALVERFKCEKCDFACKERKNFSNGHAEEPMVKIKEEPTDNLDNSQINIQDGVELVPLVEFKIEQDDPPGPIELKVEGKVETEEPADDENILEISLKTEIDSANNQKQRQPNVPDTQDSSKSNLFHCAFCNYTAKISGNLKTHINRIHLKYRPYKCDVCSYECVQKFDLERHKLSHFKKCRYCDYVGINQKALSVHRIANHSTGTENAIHLKKEKYSCSICSYTSLYKCSVDTHMRLKHNQKMYFNCDKCDHKAKTHRSLQIHINAIHTKSELVYCAHCSYTSTFKRLLAVHLRKNHSLIDAFKCEKCDFCVLRRGSSWRDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -