Dhel022251.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053333.1:3142826-3146645[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.9 1.2e+02 4.4 0.1 8 20 134 146 133 148 0.88 2 19 0.9 1.2e+02 4.4 0.1 8 20 150 162 149 164 0.88 3 19 2.8 3.8e+02 2.8 0.0 8 20 166 178 165 180 0.88 4 19 2.8 3.8e+02 2.8 0.0 8 20 182 194 181 196 0.88 5 19 3.1 4.2e+02 2.7 0.0 8 20 198 210 197 212 0.88 6 19 3.1 4.2e+02 2.7 0.1 8 20 272 284 271 286 0.88 7 19 0.9 1.2e+02 4.4 0.1 8 20 288 300 287 302 0.88 8 19 2.9 3.9e+02 2.8 0.0 8 20 304 316 303 318 0.89 9 19 3.4 4.5e+02 2.6 0.0 8 20 414 426 413 428 0.88 10 19 2.9 3.9e+02 2.8 0.0 8 20 430 442 429 444 0.89 11 19 3.4 4.5e+02 2.6 0.0 8 20 508 520 507 522 0.88 12 19 0.9 1.2e+02 4.4 0.1 8 20 524 536 523 538 0.88 13 19 0.9 1.2e+02 4.4 0.1 8 20 540 552 539 554 0.88 14 19 2.9 3.9e+02 2.8 0.0 8 20 556 568 555 570 0.89 15 19 3.1 4.2e+02 2.7 0.1 8 20 666 678 665 680 0.88 16 19 2.8 3.8e+02 2.8 0.0 8 20 682 694 681 696 0.88 17 19 2.9 3.9e+02 2.8 0.0 8 20 698 710 697 712 0.89 18 19 2.8 3.8e+02 2.8 0.0 8 20 834 846 833 848 0.88 19 19 3.2 4.3e+02 2.7 0.0 8 20 850 862 849 864 0.88
Sequence Information
- Coding Sequence
- ATGCTTCGCCTCATCATACACTACATATTGATCACAACATTGGGGGTCCGTTCGTACCGGATGCATACCGGGAAAGACGGAAATAATATGCATATTAAACAATTGTTCGACACATCACTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCATAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCATAACAATTGGTTCGACACATCTCTCAGAACTACAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTATAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAAGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGAACAATTGACTCGACACATCTCTCAGAACTACAAGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCGTCAGAACAATTGCTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCATAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCGTCAGAACAATTGCTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCATAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGACTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCGTCAGAACAATTGCTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCGTCAGAACAATTGCTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCATCAGAACAATTGGTTCGACAACATCTCATCAGAACTTACAAGTTCGTGTCATCATAACCAATTGGCTTCGACACAATCTCTCAGAAACTACAGGCTTCGTGTCATCAGAACTAATTGACTCGACACATCTCTCACCGAACTACAGGTTCGTGTTCTATCCTAACAATTGCGTCGGACACATCTCTCAGAACTACAGGTTTCCGTTGTCATTCAGAACAATTGACTCGACACATCTCTCAGAACTAACAGGTTCGTGTCATCCGAACAATTCGACTCGACCACATCATCTCAGAAACTATCAGGTTCGTGTCATCAGAACAATCTGGTTCGACAACATCTCTCAGAACTACAGGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCTCAGAACTACAAGTTCGTGTCATCAGAACAATTGGTTCGACACATCTCAGAAATACAGGTTCGTGTCGTCAGAACAATTGCTTCGACACATCTCGCTGGACTAAAAGTTCGTGTCATCAGAACAATTGATTCGACACTTCACTTAGAACTATGCATGTTCGTGTGA
- Protein Sequence
- MLRLIIHYILITTLGVRSYRMHTGKDGNNMHIKQLFDTSLRTTGSCHQNNWFDTSLRTTGSCHQNNWFDTSLRTTGSCHHNNWFDTSLRTTGSCHQNNWFDTSLRTTGSCHHNNWFDTSLRTTEQLVRHISQNYRFVSSEQLTRHISQNYRFVSSEQLTRHISQNYRFVSSEQLVRHISQNYRFVSSEQLVRHISQNYKFVSSEQLVRHISQNYRTIDSTHLSELQVRVIRTIGSTHLRNTGSCHQNNWFDTSLRTTGSCHQNNWFDTSQKYRFVSSEQLLRHISQNYRFVSSEQLTRHISQNYRFVSSEQLVRHISEIQVRVIRTIDSTHLSELQVRVIRTIDSTHLSELQVRVIRTIGSTHLRNTGSCHQNNWFDTSLRTTGSCHHNNWFDTSLRTTGSCHQNNWFDTSQKYRFVSSEQLVRHISQNYRFVSSEQLVRHISEIQVRVIRTIGSTHLSELQVRVIRTIGSTHLRNTGSCRQNNCFDTSLRTTGSCHHNNWFDTSQKYRFVSSEQLVRHISQNYRFVSSEQLTRHISQNYRFVSSEQLTRHISQNYRFVSSEQLVRHISEIQVRVIRTIGSTHLRNTGSCRQNNCFDTSLRTTGSCHQNNWFDTSLRTTGSCHQNNWFDTSLRTTGSCHQNNWFDTSLRTTGSCHQNNWFDTSQKYRFVSSEQLLRHISQNYRFVSSEQLVRHISQNYRFVSSEQLVRHISEIQVRVIRTIGSTTSHQNLQVRVIITNWLRHNLSETTGFVSSELIDSTHLSPNYRFVFYPNNCVGHISQNYRFPLSFRTIDSTHLSELTGSCHPNNSTRPHHLRNYQVRVIRTIWFDNISQNYRFVSSEQLVRHISQNYKFVSSEQLVRHISEIQVRVVRTIASTHLAGLKVRVIRTIDSTLHLELCMFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -