Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053334.1:20254407-20267096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1 1.4e+02 4.2 0.3 1 23 436 459 436 459 0.87

2 9 0.87 1.2e+02 4.4 0.2 3 23 467 487 466 487 0.80

3 9 3.1e-06 0.00041 21.6 4.4 1 23 496 518 496 518 0.97

4 9 0.00042 0.056 14.9 3.6 1 20 525 544 525 547 0.95

5 9 0.053 7.2 8.3 8.6 1 23 552 574 552 574 0.99

6 9 4.5e-06 0.00061 21.1 0.5 1 23 580 602 580 602 0.98

7 9 3.2e-05 0.0042 18.4 1.5 1 23 608 631 608 631 0.97

8 9 0.0028 0.37 12.3 2.3 1 23 636 659 636 659 0.95

9 9 0.0016 0.21 13.1 0.6 1 23 667 690 667 690 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1	1.4e+02	4.2	0.3	1	23	436	459	436	459	0.87
2	9	0.87	1.2e+02	4.4	0.2	3	23	467	487	466	487	0.80
3	9	3.1e-06	0.00041	21.6	4.4	1	23	496	518	496	518	0.97
4	9	0.00042	0.056	14.9	3.6	1	20	525	544	525	547	0.95
5	9	0.053	7.2	8.3	8.6	1	23	552	574	552	574	0.99
6	9	4.5e-06	0.00061	21.1	0.5	1	23	580	602	580	602	0.98
7	9	3.2e-05	0.0042	18.4	1.5	1	23	608	631	608	631	0.97
8	9	0.0028	0.37	12.3	2.3	1	23	636	659	636	659	0.95
9	9	0.0016	0.21	13.1	0.6	1	23	667	690	667	690	0.94

Sequence Information

Coding Sequence: atgttaacatgcTGTGTTCGTAGTTGTAAATTTCCGGATACACGTaccaaaatctcgatatttcgaatacCAAAAGAATTAGACAGATGTTATGCGTGGATAATGGCTTGCAATAGAAGTGATTTGTTGCAAAAAACACCAGAGGAACTATACAAAAATTATAGAGTGTgtggtaaacattttgaactaaAGTGCTTTACAAGTCCCGAAAGAAATAGATTGTTACCTAGTGCTGTGCCAACTGTATTTCAACCCCCTTATCCTTGTGATGAAGATCCACTGAGGATTCCAGAACCATCTAATATTCTTAGAACATTACTACTAGAAAACGAATCTGATGCACCATCTACTTCCCCTAGAAATCAACACGGTTCAACAAATGGTAGGGAGAATTATACCACAAGAACCAGCAGTACAGATGGCGTTAAAAATTGGGAAGTTGAAGATAATACATATACAGTCGTTTTATGTGAAGTTAAAGATGAGACCAAACAAGAAGAGGAAAATCAAGATGCTGAAATACAAAAAGTCTGTCGGACATGCCTGAAAGTCTTTGATATCGAAGACACTGTTGTAATATACGATGAGGTCGAAAATCCACTTGAAAATGGAATtagtttgaaagaaaaactaTACAACCTTCTTCCATATATTGATTTTAATCTATCGGAAAAGCCAGTGGTCGTCTGTAAGAAGTGTGAAAATTCAATCAATGTCTCTTACGATTTTAAACTACAATGTAAATCCTCGGAGATGAGATTGAGGCACGCCTCTAGGTTAGCCAAAAGGCCGCTAACCAATCTCCTAAAAGTTATAGATGATCTACCGCCAGTAAATGAAGTGgatgaaaatattttggataaaCCATACATCGACTCCGCCCCCGCAGAAGAAATTGAAACGCTTGATGAAGCAACCGAAGAATCCACTACCAAATCCACTATAAAAGATCCTTCACCAATTGAAGAGACTCGCTTtgttaaagacgaaattacatTGAGCGACTTGGAAGAAGGATGGGAATGGGATACCATCAGGTGCGATTCTTTTGAAGAATCGAAGCCGAAGAAGAGAAAAACCTCATATTTGCAAGATCACGATTATATCCCGGCTTGCGAGAAtgaattaaaattcgacttgCAAAAGTTTATTAATCCGCGggtcaaatttgacatttgggACGGTGATCTGGACGTTTTATCACCCCAATTCGGGGAATATTTAAAGTATCGCAAAGGGAAGCCTGGCGGGAAAATCATCAAAAGAATCAACAACTTGAAGAAACCTATGAATGGGAGGGGCCCATTCTTGTGTGAATATTGTGGATATGTTTCCTTGTCAGTCGATAGATACCGGAGACACATTGAGATTAAGCATGAGATGGGGGAGAGGAAAGCTTGTCCGGAATGCGGGAAGATGGTTATTGTTACGCTTTTCAGGCAACATTTGAAGATTAGGCATTCAACGGAACAGAAAGATACTATACATATATGTCACAAATGTGGAAAGTGtttctcaaaTCGTCCTGCTTTAGCAATTCACATCAAGACTCACGAGAACAGAGTAAAGAAGTTCCAGTGCCCTATATGTAGTAAAAGTTATTATACAAACTATGCATTAAGAACACACAAACTCTGTCATGGGGAGAAACAGTTTAAATGCGAATATTGCTTCATGTCCTTCCATCATGAATTTAGATTGAGAAAACATTTGCAAAAGCATGAGGTGGAAGCAGCATTTCAATGCAATATTTGTGATAAGGTTCTTAAATACCAACGCAGTTTAGAGGAACACATGAAAGCGCACGCGAACGACAACAAGTTCAAATGCGACTTTTGTGATGAATCTTTTAGAAAGAAGGCGTCCCTGGAACTCCACAAGAACAAAGTTCATTTGAAGAAGGATTTCAAGTGCGAATACTGCTTACGACAATTTTACCTCAAATACAACCTAGACAGGCATTTGGAAAATCAACACGGGAAAAGTCTACATACCAATTTCCGATGCAACAAATGTGATAAAGGTTACGTAAGGGAGGAGCCCTATAAGCAACATTTAATTGAAAGGCATGGAATTTACGTTGAACAAGTTGAAGAGCATATGAAGATATTGCTATCGGACGCTGAAGAAGAATTGATCGAATATGTTGAAGTGGATTCTGAAGACGAAGGTCAGATCATTGAAGAGGATGAAGAAAATTGTCAGATCATGGAAGAGGATGAAGAAAATTGTCAGATCATCGAAGAGGGAGAAGGTTCCCAGAGTATGGAAGAGGGAGAAGGTTCCCAGAGTATGGAAGAGGAAGATTATCAGAGCGTTGAAGAGCAAGGGCAAGATGGTCAAAACTTGGAAGACCAAGATGAGGAGCAAGAAGTTCCGGAAGAAACAACTTTAGAAGACACATTACTTTATGAAGAGGATGAAACCGATTCATCTGAATTCTACGATAAACGTGTTGAAGTTATACACATTCctaatgaaatttga
Protein Sequence: MLTCCVRSCKFPDTRTKISIFRIPKELDRCYAWIMACNRSDLLQKTPEELYKNYRVCGKHFELKCFTSPERNRLLPSAVPTVFQPPYPCDEDPLRIPEPSNILRTLLLENESDAPSTSPRNQHGSTNGRENYTTRTSSTDGVKNWEVEDNTYTVVLCEVKDETKQEEENQDAEIQKVCRTCLKVFDIEDTVVIYDEVENPLENGISLKEKLYNLLPYIDFNLSEKPVVVCKKCENSINVSYDFKLQCKSSEMRLRHASRLAKRPLTNLLKVIDDLPPVNEVDENILDKPYIDSAPAEEIETLDEATEESTTKSTIKDPSPIEETRFVKDEITLSDLEEGWEWDTIRCDSFEESKPKKRKTSYLQDHDYIPACENELKFDLQKFINPRVKFDIWDGDLDVLSPQFGEYLKYRKGKPGGKIIKRINNLKKPMNGRGPFLCEYCGYVSLSVDRYRRHIEIKHEMGERKACPECGKMVIVTLFRQHLKIRHSTEQKDTIHICHKCGKCFSNRPALAIHIKTHENRVKKFQCPICSKSYYTNYALRTHKLCHGEKQFKCEYCFMSFHHEFRLRKHLQKHEVEAAFQCNICDKVLKYQRSLEEHMKAHANDNKFKCDFCDESFRKKASLELHKNKVHLKKDFKCEYCLRQFYLKYNLDRHLENQHGKSLHTNFRCNKCDKGYVREEPYKQHLIERHGIYVEQVEEHMKILLSDAEEELIEYVEVDSEDEGQIIEEDEENCQIMEEDEENCQIIEEGEGSQSMEEGEGSQSMEEEDYQSVEEQGQDGQNLEDQDEEQEVPEETTLEDTLLYEEDETDSSEFYDKRVEVIHIPNEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00423929;
90% Identity: iTF_00423929;
80% Identity: iTF_00423929;