Dhel019784.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053331.1:39362821-39364611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.4 6e+02 2.2 0.1 2 11 219 228 219 238 0.84 2 11 0.047 6.3 8.4 2.1 1 23 319 341 319 341 0.98 3 11 0.29 39 5.9 0.5 3 23 348 368 347 368 0.97 4 11 0.019 2.6 9.6 1.6 2 20 373 391 372 393 0.93 5 11 4.6e-05 0.0062 17.9 3.9 1 23 400 425 400 425 0.96 6 11 0.00076 0.1 14.1 0.2 3 23 433 453 432 453 0.96 7 11 1.8e-05 0.0024 19.2 3.4 1 23 459 481 459 481 0.98 8 11 1.2e-05 0.0016 19.7 0.3 1 23 487 509 487 509 0.98 9 11 8.1e-06 0.0011 20.3 0.8 1 23 515 537 515 537 0.97 10 11 0.017 2.3 9.8 2.2 2 23 545 564 544 564 0.74 11 11 0.0005 0.067 14.6 1.6 3 23 572 593 570 593 0.97
Sequence Information
- Coding Sequence
- ATGGGCGACAAACAGTACTATAATGGGTCTTACTGCTCGTATGGAAAATTTGAGTGTCAGATGCAGAATCAAGAGAATATCCATAATCCCACCCAGCAGAATCAACTGTTCCCTTACATGGCTTTTAACAACGCCTATCAGTCGTCGAATTTTATGCAAATGTACCCCATGGGCAACCTGAATCACTGCAAGAGTATAAGAGGTTATGGGGACCAAGCAGACGCCATTGGTACGTTTTGGGACGGTCGAATTTTGTCCGACGTTGATAAACACCTGAAAATGCCCGAGAAGGTCGATTTGGTACAAATTACGAGTAAAGATTTGAGCCCCGCCGCTAGTTACTGCAGCAACGAGCTGAGTGACTTATCAAAAATGAAAGATTGGTATAGTTGCGCcattgaacaaaataaaaatgatagcGATAAGTATAGTTATAGTTGCGACTTATTAAGCGAGAATCATCAATATTACACGTATCCTAGTTATGAGACAGGTGCGCAGTATTATAATCAGAACCAATTTCAGAGTACGTTGGAGGTTTTTGATCCTATTACTAGTTTGGAGCAGCAAACAGAAGATGACGAAAGTGATATAGTTGTCGAAGATACGGATGAGGAAATAACTGATTATAGCGAGGATTTAGAGGGGAGAAACAGATGTAGTATATGTAATGTATCGTATACGCCGGCGGGGGTGCAGTTTTATCATTTAACGATGGAAAGTCCGCTGACGATGTCCACCCAACGTCCTGtactttcagaaataaaaagCTTGCTAAAAAGTAGCTTTTTAGGTAGAAATTTCATTTGTAACAGTTGCTTGGGTCTTGTTAACTCTATAGATCACTTGAAAGTAAAATTGGATGGTTTTAATAAagaattaaagatgaaatttaaggaaactTGTGACACAAATAAGACTAAATtagttaaaaagaaaaaatctgttATTAGCTATAAATGTAGAAAATGCAAGAAGATTTTATCTATTAAAAAGTATATTCAATTACATATCAAGTTGCATAAAAGGAAAAAATGGTTGTGTGAAGTGTGTGGCATgttatttcttaatttaaaaaagtttaagttgcATATGGCTAAACATAATGACTCGAAAATGTgccaaaattgtcaaagaaGCTTCAAAAGTATTCCAAAACTTAAGGAACATCAGCATTATTGTCTTAGTTTATATCCATTCAAGTGCCCAAAGCCTCACTGTGATAAAAAGTTTGCTACGTccacaaaattaagaaatcatACAAAACTGAAACATGATAAGAAATTTGTGGCAATTTGCTCCATTTGTAACATTGGGTTTGTCAAATTATCAGATTACAAGTCGCACATGGTGTCCCACAGCACAGATAAAAAGTTTCAATGCAACAAATGCGATAAAAGCTATAAAACCTTAAGCAACTTGAATTTTCATCTTAAGAGCCACTCGAGGAAACTCCCGTTTATATGCAGCGAATGCGGCAAGGGTTTCATGAGGAAAGAATACTGGGAAGCTCATCTAAATAAGCACAATGGGGTCAAAAACTTTATTTGCAACATTTGCGATAAGAAATTCGTTGCGCAGAAAAACTTGGATTCGCATATGAAGTACCACGATGGGAGCCTGAAGTGGAAAACTTGTAATATATGCGGGAAGAGTTTCACGACTGGTTTTGAGGAACACTTGAGGATACATAACAATTTAAGGGAATTTGGATGCGACGTGTGCAACCTCAAATTTAATACTAAAGGAACTTTGGCGAAACACAAGAAACGGAAGCATGGGGCCACTTGA
- Protein Sequence
- MGDKQYYNGSYCSYGKFECQMQNQENIHNPTQQNQLFPYMAFNNAYQSSNFMQMYPMGNLNHCKSIRGYGDQADAIGTFWDGRILSDVDKHLKMPEKVDLVQITSKDLSPAASYCSNELSDLSKMKDWYSCAIEQNKNDSDKYSYSCDLLSENHQYYTYPSYETGAQYYNQNQFQSTLEVFDPITSLEQQTEDDESDIVVEDTDEEITDYSEDLEGRNRCSICNVSYTPAGVQFYHLTMESPLTMSTQRPVLSEIKSLLKSSFLGRNFICNSCLGLVNSIDHLKVKLDGFNKELKMKFKETCDTNKTKLVKKKKSVISYKCRKCKKILSIKKYIQLHIKLHKRKKWLCEVCGMLFLNLKKFKLHMAKHNDSKMCQNCQRSFKSIPKLKEHQHYCLSLYPFKCPKPHCDKKFATSTKLRNHTKLKHDKKFVAICSICNIGFVKLSDYKSHMVSHSTDKKFQCNKCDKSYKTLSNLNFHLKSHSRKLPFICSECGKGFMRKEYWEAHLNKHNGVKNFICNICDKKFVAQKNLDSHMKYHDGSLKWKTCNICGKSFTTGFEEHLRIHNNLREFGCDVCNLKFNTKGTLAKHKKRKHGAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -