Dhel025697.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053334.1:18756918-18767230[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.22 30 6.3 0.2 2 19 83 100 82 105 0.89 2 14 0.0003 0.04 15.3 0.8 1 23 108 131 108 131 0.97 3 14 2.1e-05 0.0028 19.0 0.3 2 23 134 155 133 155 0.97 4 14 0.0023 0.31 12.5 0.3 2 23 172 194 172 194 0.96 5 14 0.045 6 8.5 0.2 1 20 206 225 206 227 0.87 6 14 0.0015 0.2 13.1 4.4 2 22 242 262 241 262 0.96 7 14 2.5 3.3e+02 3.0 0.2 2 23 282 304 281 304 0.85 8 14 0.11 15 7.3 0.1 2 19 403 420 402 425 0.90 9 14 0.00099 0.13 13.7 2.7 1 23 428 450 428 451 0.95 10 14 1.3e-05 0.0017 19.6 0.3 2 23 454 475 453 475 0.96 11 14 8e-06 0.0011 20.3 1.9 1 23 479 502 479 502 0.94 12 14 0.00011 0.015 16.6 1.6 2 23 512 534 511 534 0.97 13 14 0.075 10 7.8 1.1 2 22 544 564 543 564 0.95 14 14 1.8 2.4e+02 3.5 1.1 3 23 589 610 579 610 0.91
Sequence Information
- Coding Sequence
- ATGAATGAGGGATGTTCCAGACACGCTTTCCTAGAAAAAGCCCCAAAAAAGGAATGGGAGTCAAACTATACAATTTGTGAAGAATGTGAAGCAAAATTAAACATAGTcatagaatttagaaatttatgcCTCGAATCGGAGCAATTTAGAAAGAATCTGGACACAAAGTCTCTCTATGAGTCCCAAAGTTACGTCGATTGGGTCGACATAAAAACTGATATCTCGGATAGGGAAACCAACTTAATCGAATGTAAAACCTGTAACATTAATTTCCAAAGCGATGAAGCTCTTAATCAGCACAACGTTGAAAGTCATAGACTCTACAGCTGTTTCAAATGTGATAATGTATTTCCACTTAAATCTGAATTGGAAAAGCACGAGAAAAGTCAACATGATTTAGTTTGTAAGCAGTGCAATGAGAAGTTCTCAACTCGGGTGTTATTGGAAGAGCACATTGAGACGCACATTGGGGTATTCGTTTGTTATCCACTGCGTTTGTCTAAGAGAACGAGAACATGTCAATATTGTGACAATGTTTACATCAACACAACTCTACTGAAGGACCACATAAAGAATATACATGGCATCGATACGTTGGTTACAAAAAACAAATCCTATCAATGCACCAAATGTGAAAAGTCGTACGTTTTGGAGAAAGTGATGGTAAACCACATGACGAGTTGTGATGGTGTCGAAAGACAGCCGAAGATTAACCCCAATAACAAGTGTAATAGATGTGAAAGATGTTACAAATCTaggaaattattaaaagaacATATGAAGACCTGTAAAGACATTAAAGAGAAAGAAATGTTAGCGTCAGCTGAGAAAGTGGACAATTGGGTCTGCAGTTTATGTAAGCTCGAATTCAGTGGTTACATGGAGAGACAGAATCATTTTCTGCTCGAGCACAAGTTGGACATCACAGCTGACAACTTTTGTTTTCAACAGTTTGATGGTTCAAAAGACTGCAAGGACCATATCGCGCTAAGCCACAGCAGTCaggaGTGGGAGCCAAACTACACAATTTGTGAAGAATGTGAGGTAAAATTAAACGTAGTcatagaatttagaaatttatgcCTCGAGTCTGAACAATTTAGAAAGAATCTGGACACAAAGTCTTCCTACGATTCCCATAATTACGAATGCGACGACTGGGGTGACATAAAAGCTGATATTTCCGATGGGGAAGACAACTTAATCGAATGTAAAGTCTGCAACATTAATTTCGAAAGCGACAACGCTCTTAATCAGCACAATGTTGAAACTCACAGACTCTTCAGTTGTTTTAGTTGTGATAATGTATTCTCGCTTAAGTCTGAGTTGGAAAAACATGAGAAAAGTCATCACGATTTGGTTTGCATGCAGTGTAAcgaaaaattttcgactcaGGCGCTACTAGAGAAGCATATCGAGACACATATTGGCGTTTTCGTTTGTTATCACTGCAGTAAAGGTTTCAAAAGCAAATCTCTGCTGATACGACATATAACATTGGTCCACGTGAAAAATGCATCCAAGCGGACGAAAACCTGCCAACACTGTGATAACGTTTACATTAACAAAACTCTACTCGAGGACCACATGAGGAAAGTGCACGGTATCGTTAAGGACCCCAATCAGAACAAGTGTGATAAGTGTGAGAGGTTTTACACAAccgagaaaatattaaaagcgCACAGGAAGACCTGCAGAGGCATTAAAGAGAAAGAACGGACGGCATCAGCTGAGAAAGCGTTTAATTTTAAGCACAACCTCGACTGCAACTTGTGTAAGCTCGAATTCAACAGCGAGATGGAGAGACAAAATCATTTTTTGCTTGAGCACAAGCTGGATACCTTCCGCTGA
- Protein Sequence
- MNEGCSRHAFLEKAPKKEWESNYTICEECEAKLNIVIEFRNLCLESEQFRKNLDTKSLYESQSYVDWVDIKTDISDRETNLIECKTCNINFQSDEALNQHNVESHRLYSCFKCDNVFPLKSELEKHEKSQHDLVCKQCNEKFSTRVLLEEHIETHIGVFVCYPLRLSKRTRTCQYCDNVYINTTLLKDHIKNIHGIDTLVTKNKSYQCTKCEKSYVLEKVMVNHMTSCDGVERQPKINPNNKCNRCERCYKSRKLLKEHMKTCKDIKEKEMLASAEKVDNWVCSLCKLEFSGYMERQNHFLLEHKLDITADNFCFQQFDGSKDCKDHIALSHSSQEWEPNYTICEECEVKLNVVIEFRNLCLESEQFRKNLDTKSSYDSHNYECDDWGDIKADISDGEDNLIECKVCNINFESDNALNQHNVETHRLFSCFSCDNVFSLKSELEKHEKSHHDLVCMQCNEKFSTQALLEKHIETHIGVFVCYHCSKGFKSKSLLIRHITLVHVKNASKRTKTCQHCDNVYINKTLLEDHMRKVHGIVKDPNQNKCDKCERFYTTEKILKAHRKTCRGIKEKERTASAEKAFNFKHNLDCNLCKLEFNSEMERQNHFLLEHKLDTFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -