Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: RREB1
Assembly: GCA_028583605.1
Location: CM053330.1:19196247-19210194[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.016 2.2 9.9 1.6 1 23 92 114 92 114 0.97

2 16 0.00014 0.019 16.4 0.3 1 23 128 150 128 150 0.98

3 16 0.00021 0.028 15.8 8.4 1 23 156 178 156 178 0.98

4 16 9.3 1.3e+03 1.2 0.6 1 9 239 247 239 247 0.89

5 16 0.014 1.9 10.0 3.8 2 23 270 292 270 292 0.95

6 16 0.014 1.8 10.1 0.1 1 19 338 356 338 359 0.87

7 16 0.069 9.2 7.9 0.1 1 23 498 520 498 520 0.96

8 16 7.8e-06 0.001 20.3 0.8 1 23 529 551 529 551 0.99

9 16 0.00079 0.11 14.0 3.1 1 23 557 580 557 580 0.97

10 16 0.00047 0.063 14.7 3.0 1 23 992 1015 992 1015 0.97

11 16 0.00047 0.064 14.7 0.4 2 23 1227 1248 1226 1248 0.97

12 16 0.12 16 7.1 6.3 1 23 1254 1277 1254 1277 0.97

13 16 0.0075 1 10.9 1.5 1 20 1305 1325 1305 1326 0.96

14 16 0.019 2.6 9.6 0.6 1 23 1388 1411 1388 1411 0.95

15 16 0.016 2.1 9.9 0.4 3 23 1458 1478 1456 1478 0.93

16 16 0.0072 0.96 11.0 5.9 1 23 1484 1506 1484 1506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.016	2.2	9.9	1.6	1	23	92	114	92	114	0.97
2	16	0.00014	0.019	16.4	0.3	1	23	128	150	128	150	0.98
3	16	0.00021	0.028	15.8	8.4	1	23	156	178	156	178	0.98
4	16	9.3	1.3e+03	1.2	0.6	1	9	239	247	239	247	0.89
5	16	0.014	1.9	10.0	3.8	2	23	270	292	270	292	0.95
6	16	0.014	1.8	10.1	0.1	1	19	338	356	338	359	0.87
7	16	0.069	9.2	7.9	0.1	1	23	498	520	498	520	0.96
8	16	7.8e-06	0.001	20.3	0.8	1	23	529	551	529	551	0.99
9	16	0.00079	0.11	14.0	3.1	1	23	557	580	557	580	0.97
10	16	0.00047	0.063	14.7	3.0	1	23	992	1015	992	1015	0.97
11	16	0.00047	0.064	14.7	0.4	2	23	1227	1248	1226	1248	0.97
12	16	0.12	16	7.1	6.3	1	23	1254	1277	1254	1277	0.97
13	16	0.0075	1	10.9	1.5	1	20	1305	1325	1305	1326	0.96
14	16	0.019	2.6	9.6	0.6	1	23	1388	1411	1388	1411	0.95
15	16	0.016	2.1	9.9	0.4	3	23	1458	1478	1456	1478	0.93
16	16	0.0072	0.96	11.0	5.9	1	23	1484	1506	1484	1506	0.98

Sequence Information

Coding Sequence: ATGCAAGGGGTAGTCTTTATGCCACAAAACCCTCAACAAGGCTCCCCGCCGCCAAGCAACACTCTAGATGTGAACATGGATGGATCGCCTGTACCCATATCAAAGGAAGAAACCAAAGAAAATTCAGTCAACCAAAGCAACGGTAGTGATTCCGGTATATTTTCTACAACTAGCAACTCGACTTTAGACCATATGGAAGTCTTAAATCGTACTAACAACTCAGAAAATTACGACACTGACAATCGAAGTGATTGCAGCTCACCCGAAAGAAAATACATATGTCCAATTTGCAACACAAGGCAGACTTCACAGCACGAATTTACGCTTCATATTAAACTACATAACAACGAAAGTGAAGTACACCAAGAAAGTGAAAAAGGCTATACTTGTAGAATATGCTCAAAAGTTTTGAGCTCGAGCTCTAGCCTAGATAGACACGTCTTGGTGCATAGTGGTGAGCGTCCGTTTCATTGTAAACACTGTGGGGACACGTTTACAACGAACGGTAATATGCACAGACACATGAGAACGCATTCGCATAAGTCAAAAAATTACGAATCAGATGGCAGTACCGACAGCACTGCTAGTTCTGGGAAAAGCAtcgaatataataataataaagttgaTTTGAAACCTAAGAGAAAAGTAGACTGCGATGaagaaaatatatataaaaaacgAGAAAACTGCATTGGCGAAGAAGAAACCCAAAGTTACAAATGTCCTGTATGTGAAAGAACTGATTTTGATTCCATGTTAGTTCTGGACAGTCATCTATTTGACAATCATCCTGACTATTTTCCTGCTAAATGCAACCAATGTAATCAATACTTCCAAAATCATTCACAACTAACTAATCACAAAGTTACTGTGCATGATCCTAGTCCAAATAAACACAGTGTTGTAGGTTTCAAAGATTTAACTTTTATCGATTTTTCTAGCGAAAAATTCCCCCATATAGCACGCTACGAATGTGAAAAAAACCTCCATAAAGTATCTGGCTCTCTCAAGTTTCAATGCAAAAAATGTGGCAGAGCTTTCCCTATAGCATCTTCGTTAGAATTTCATGAGCGAGAATGCACTGTCGGGGATACTGACTGCACTTTAGATTTAAGCAAAAGCAATTTTTTGCAAGGTGATATCAGAAGAACAGATTTCTTTTCAAGACTAAATTTGCAGGATGTTTCGCCTGAGAAATGCTCTGTAAATATTTCGCCTACACGTTCTGAAAGTCCAACCAAATTACGGAGACAATTAATGGGAAAAGCAATCGGGTTTGATGGTACTAAAGATCTGGCTGATATTCAATCAATAATATCAATGACAACTAATGGAAGTTTACTTCAACAACTGCAGGCTCAGACTAATGAAATAGCCTTGACAGGACAAAAATCTCAGATTGATGTTTGTCAGGATTTGTCCAGAAATGAGGAAGAAGAGACCCAAGACGCATTTGctatggaatttcgaaaaatgaaacttCGTGGAGAATTTCCTTGCCGCCTTTGCACtgcagtttttccaaatttaagagCTTTAAAAGGTCATAACAGGGCACATTTGAATGGTAACAACAATGGAATGTACCGCTGCAATATGTGTCCCCATTCGTCTATTGATAAAGCAGCCTTAATTAGACATATGCGAACTCATAACGGTGACAGACCGTACGAATGTTCTTTATGCAACTACGCATTTACAACCAAAGCAAACTGCGAGCGACATTTAAGAAATCGCCACGCCAAAACTACTAGAGAGGAAGtgaaaaaatccataatttatCACCCCTCTGAAGATCCAACAAACGATGACCTAAATAAACTATCTTTGAGGGAAGatcaaaagaaaaacaatctCAATTCGTCTTCTGATTTGACCGATATCAGTCCGGAAAAAGTGCAAACATCTACCCCTAAAATACCAGAAATACGAAACATACTTCCAGATATTGTAAAACCAGATATAAAAAGCTACGGAAAACCCGAATATACTTCAATGATATCTAATTTACAAGCATTGAAAGATATGACTTTACCCAAAGAGCCTACTAAATTGATCTCTACTATTAATGATGTAATGCgcaaggaaaatttaaaaacattacaaGAATTCAGAAATTTGCCACCAGGACCAATATCGCCTTATTTTCCTGCTCCTTAcagctttccaaaatttaataattttccacCTTCCTTACCGACGTCTCCAAAAATTcacgttaaaaatttcgatactctCAAAGAAATGTATCATAATTCAGACGAAGAAAGTGAAGAACACGAAGAAGATCAAGCATTAGACCTGagcaaaaagaaaatagaaaaagaaattattaaccCAGAGGACGACGCTCCCCAAGATTTAACTAAAAAGTCAAATCCTGTGACCCCAACAACGCCCCAATTGAAAATGGGTGATATTTTTGCGCATCAAATGTTACAAACACAACCTAAAATCGATGCATCTGCTGCCCTTTATGCTCAGTGGGCACTTTGCAGAAACGGTTTTTCTGGGTTACCAAATTGGCCGCCATTCCCCATAAACCCCATCCTTTTACAATCGCTTCAAGCTTCTGCTAACAATCCAGAAAATCAAGAGATGAAAGAAAGACTTCGATATCAACTTTGCGGGGGTACAATGATCACggataatttttcagaaagactaaaaaatctTCAGCAACAAGCCTTACGCAACCCACCGTTTGGTTTTAACGGCTTAAAAATGGAAGAAATAAATCCGGAGATCAAATTAGAAAGCAATAACTTCTCGACCCCCAAAAAACCAGACGACATGAAAcctttaagtttaaatattgatCCTACGTTCGGAGATAATTTATCTAAAATGCACAGCCCCATTCCTCCCGTTAAACAAGATCTATTACAATCCCCCAACTCAGTAAAAATGGTGATAAAAAATGGCGTTTTAATGCCAAAGCAAAAACAGAGGCGTTATAGAACCGAGAGACCATTTACATGCGAGCATTGTTCTGCTAGATTTACTTTGCGATCAAACATGGAGCGACACATAAAGCAACAACATCCTCAGTTTTGGTCCCAACGCCAACGGGGCAATGTTGGTAATCCCGGACGAAAACCTCAGGGCCTCCCTATGAAACCAAATTACTGCGACCTTAGCATTCCCAATTACGAGATGTCAAAAACTCAGGAATACGAAGAAACCAAAGAATCGATCAACGAGAAACTCAAGTAcgcaattttggctcaacatcTTAGAGCCACTCAATTCCACTCCTCCGCGGAGAACAAAAAAGAAGAGGATGAAGATGGGGCTCTTGTCATAGATGAGAACGACGATAAgactgaagataaccaaagaacTGATAGTGAACGCAATAAACTGATGGAAGAAAAGTCTAAGGATCTACAAAGTAAAACTGAACTGAAGCCGTCCAAGAATGAGGAAAACCAGGATTTAGTGCCAATCTCAAGATTACTGGATAATGCATCCCAACAGCAATTTAAAGAATACTTCAAAAGAGAGAACGAAGAACATGAAATCGGAATTGGAagtgaagaagatgaagaaggtcTGGTAGCTAGTGGGAGCACTAGTGAAGAAAATATATCTGGGACAGATGAAAACagatcTGAGTCAGAAGCTCCAGCTCCAGTGAAGAAAAAATCTGCCTACTCTCTTGCCCCGAACAGAGTGAGCTGCCCTTACTGCAGTCGGAAATTTCCATGGACATCTTCCCTACGTCGTCATATTTTAACACATACCGGCCAGAAACCTTTTAAGTGCAGTCACTGTCCTCTACTATTTACCACAAAATCTAACTGCGACCGCCATCTATTAAGAAAGCACGGTAATTCCGCTACTACTATTACAAATGACGCCATCAATAACAACACAAATTACTTAATGAGAAATGTACCTGAAAGACCTTTTAAGTGCTCGAATTGCCCAAGTAGTACTTTTTCTActtattccaatttaaaaaaacacatgacTTGTAAGCACGCCACCAACGCTCAAGGGGACGACATTAAAGCACAGGGATATGAAGCGGGAAGTTCAGAAGAtgaaaaaattcccaattctGATCACAAATCGGATTGGGAAAATCAAATATCGCAAAATAGACTGCTACCTAATGAACCTCACAACATacaagttcaaaattcagatctgCCATTTAAATGTCACTTGTGTGATGGTTCTTTTGCGGACAGACAAGACGCCCTGGATCATATCAAAGATCGCCACGCTTCCGAGTATGATCTGCTCATGTCTAAAAACGCTCTAGATAGTAACGCTACCGCACCTGAGGAAAATAACCACAATGAGGAAGAAGAGAGTgaaattcgaggaaaatttcCGGATTACTCAAATCGAAAAGTCATATGTGCGTTTTGTATGAGACGATTTTGGTCCGCTGAAGATCTAAGGCGACATATGCGCACTCATACCGGCGAACGTCCTTTTAGCTGCGATATCTGTCGACGAAGGTTTACCTTAAAACATAGCATGTTACGACATCGAAAGAAGCACAATGTTCATTTTGAAAACGACAACGGTGTTAGTGATGAGGATGGCAACATGCAATCACCAAGTTTTGAGAAGTTAACAAAAGGGGAgaaaattaaaagtgaaaaaactGATGAATCGGATGGTAACGAAGGAGGTGACTTAATTAGTAATTTATTAGGTATACGCCCTTCATTTATTGATAAAGTTCTTACAGCTTCAGCTGATGACGCTGCTAAATTATTAGGTGTTAAGAATGGTGCAAAAGAGTAA
Protein Sequence: MQGVVFMPQNPQQGSPPPSNTLDVNMDGSPVPISKEETKENSVNQSNGSDSGIFSTTSNSTLDHMEVLNRTNNSENYDTDNRSDCSSPERKYICPICNTRQTSQHEFTLHIKLHNNESEVHQESEKGYTCRICSKVLSSSSSLDRHVLVHSGERPFHCKHCGDTFTTNGNMHRHMRTHSHKSKNYESDGSTDSTASSGKSIEYNNNKVDLKPKRKVDCDEENIYKKRENCIGEEETQSYKCPVCERTDFDSMLVLDSHLFDNHPDYFPAKCNQCNQYFQNHSQLTNHKVTVHDPSPNKHSVVGFKDLTFIDFSSEKFPHIARYECEKNLHKVSGSLKFQCKKCGRAFPIASSLEFHERECTVGDTDCTLDLSKSNFLQGDIRRTDFFSRLNLQDVSPEKCSVNISPTRSESPTKLRRQLMGKAIGFDGTKDLADIQSIISMTTNGSLLQQLQAQTNEIALTGQKSQIDVCQDLSRNEEEETQDAFAMEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNDDLNKLSLREDQKKNNLNSSSDLTDISPEKVQTSTPKIPEIRNILPDIVKPDIKSYGKPEYTSMISNLQALKDMTLPKEPTKLISTINDVMRKENLKTLQEFRNLPPGPISPYFPAPYSFPKFNNFPPSLPTSPKIHVKNFDTLKEMYHNSDEESEEHEEDQALDLSKKKIEKEIINPEDDAPQDLTKKSNPVTPTTPQLKMGDIFAHQMLQTQPKIDASAALYAQWALCRNGFSGLPNWPPFPINPILLQSLQASANNPENQEMKERLRYQLCGGTMITDNFSERLKNLQQQALRNPPFGFNGLKMEEINPEIKLESNNFSTPKKPDDMKPLSLNIDPTFGDNLSKMHSPIPPVKQDLLQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGNVGNPGRKPQGLPMKPNYCDLSIPNYEMSKTQEYEETKESINEKLKYAILAQHLRATQFHSSAENKKEEDEDGALVIDENDDKTEDNQRTDSERNKLMEEKSKDLQSKTELKPSKNEENQDLVPISRLLDNASQQQFKEYFKRENEEHEIGIGSEEDEEGLVASGSTSEENISGTDENRSESEAPAPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNDAINNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHMTCKHATNAQGDDIKAQGYEAGSSEDEKIPNSDHKSDWENQISQNRLLPNEPHNIQVQNSDLPFKCHLCDGSFADRQDALDHIKDRHASEYDLLMSKNALDSNATAPEENNHNEEEESEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVHFENDNGVSDEDGNMQSPSFEKLTKGEKIKSEKTDESDGNEGGDLISNLLGIRPSFIDKVLTASADDAAKLLGVKNGAKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -