Dhel011498.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053328.1:22807787-22816291[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.41 55 5.5 0.8 2 20 34 52 33 54 0.92 2 14 0.87 1.2e+02 4.4 0.2 1 12 121 132 121 138 0.90 3 14 0.1 14 7.3 4.5 2 22 247 267 246 270 0.89 4 14 7.7 1e+03 1.5 0.0 3 23 274 296 272 296 0.76 5 14 0.0015 0.21 13.1 4.2 1 23 312 334 312 334 0.98 6 14 0.082 11 7.7 3.9 1 15 366 380 366 387 0.80 7 14 3.5e-06 0.00046 21.4 0.7 1 23 393 415 393 415 0.97 8 14 0.00057 0.076 14.5 3.5 1 19 421 439 421 441 0.96 9 14 0.0002 0.027 15.9 2.5 1 23 449 471 449 471 0.97 10 14 8.8e-07 0.00012 23.3 3.8 1 23 477 499 477 499 0.97 11 14 0.0002 0.026 15.9 9.5 1 23 505 527 505 527 0.99 12 14 6.1e-06 0.00082 20.7 0.4 1 23 533 555 533 555 0.98 13 14 9.7e-05 0.013 16.9 0.1 1 23 559 581 559 581 0.98 14 14 0.00087 0.12 13.9 0.0 1 23 589 612 589 612 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCATTGCAATTAAATTGTCCTTTATGTTGTAGCGACACCTTCGATTCACACGATTCTTTAAAATACCATTTATTAAGTATAATAGATAATTTAATATGCCCTTCTTGCAATTTACGATTTAATGATATATTAAAATTATGTCATCATTTAGAGGAAAGTTGTACTACTCAGGCGGAAGTAAATGGAGAAGTTGAAGCGGATGCAGATGAAAATGAGATGTAttcaataaaagaaaaaataaatggtgGTAAAGATGAAATGATTAAAAATGGCAGTATTTTGGCTAAACTCTTAAGAAGTAATGATGATGAACTTCAAATGAATTCATCATTGACAGAAACAGCAGATGCGGAATATTTTTGTGAAGGTTGCAACATGCACTTCACTTCAGTAGAAGATCACCTGAACAATTTCCATTCAGGACATGTTGTGATGGTAGAAtctgaagaaaatggaaatattgaagAAGAAACAACTGACGATGCTGCCTTGGAAAGTGACTTGATACCTGAAAATAATTTCGTACTGACTGACAtaaatgaggaagaaatttttTGTACTGATAAAGATGGTCGTCCGTATACAAGAAAGAtggttaaaattggaaaattttggaaagattcTGAATCAAGTAGAACTGCAATAGAAGAAAAATATTCATTCGTTGATGTTGATGATAAGAAACTTATCAATGAAGAGCCGGGCTCTTTGGAATCTATAATCACCTTGCTCAAATGCTCAAAATGTTCACTAAGATTTTCGAAATATGAAGATTTTCAAGTACACAAGTGTTCCACAAATCACACCTATATGTGTCCTTATGGCCCTTGCAAAGCGGAATTTCTTACCATAGATGCTCTTAATGCCCACATAGACATGCATGTAAAAAACgcagaaagacgaaatttagaacaGACAAAAATACTCCACCGCTGTAAAACGTGCAAAATTTCTTTCCCTTCGGCCAGATCGTTACATCTGCATGAAAGAATGCATAAGCCCATTATAGCCAAAAAAACCGAAGTGACGGCAGTCCCAGCAGTTTACGATCCTTCTGGTGAAAGGGAtatgactttaaatttagatacTTTCAGTTGTCCTATTTGCCACAAAATATTTTACACACAATATGAAGAAGTTCATATGAAGTCTCATGGGGAAGAGGACGATTTTGTGTGTACGGtatgcaataaaaaattttattcgcAGGAGAATTTAAATATGCATGCACGCGCGCATAGtgcaacaaaaaatttttcatgTTCACACTGTAAAAAGACttttacgaattttgaatcgTTAAAAGAACATTCGTCAGGAGTATGTCAGATGAGAAAATACGATTGTAGTTTTTGTGGTCGAAAATTTTCTAGACCACACGAAAAAGTGAAGCACGAAAGAATACACACAGGAGACAAGCCTCACATCTGCGAAATATGCGGAAAATCCTTCAGAGTTAGTTACTGCCTTACACTGCACATGCGCACCCATACCGGTGTTAGACCTTATAAGTGTTCTCATTGTGGAAAACGGTTTAAATCACATAGTGTTTTTAATCATCACTTGTCTACTCATTCGGATGAAAGACCTTATAAGTGCCCATTTTGCCCCAAAGCTTTCAAGACTAGCGTTCAGTTAGCTGGGCATAAAAATAGTCACACCAAACCTTTTACTTGCAATGTATGCAATCGACCCTTCGCCTCCTTGTACGCTGTTAGAGGCCACATGGAAACGCACAAAAGAGAAAATAACCTCAAATATGAATGTTGGACCTGTGGAGCTATCTACGCGAGGGCATTTGCTCTAAGAGATCACTTAATGTCTCAGCATAACAAAGAAATGAAAGACAATAATCCTCCTGATCTACTTGGTGACAATTCAGCTGTTACTATATTGTCAATGAGTGATGACATGATGGTGGACTTAGATGTTAAATGCGATGTTGAGGCAGTTCGTGTTGATGAATTCATTCCCAAAGAGGTAGTAAGCAAATCAGATTTAAGTGAATGA
- Protein Sequence
- MGSLQLNCPLCCSDTFDSHDSLKYHLLSIIDNLICPSCNLRFNDILKLCHHLEESCTTQAEVNGEVEADADENEMYSIKEKINGGKDEMIKNGSILAKLLRSNDDELQMNSSLTETADAEYFCEGCNMHFTSVEDHLNNFHSGHVVMVESEENGNIEEETTDDAALESDLIPENNFVLTDINEEEIFCTDKDGRPYTRKMVKIGKFWKDSESSRTAIEEKYSFVDVDDKKLINEEPGSLESIITLLKCSKCSLRFSKYEDFQVHKCSTNHTYMCPYGPCKAEFLTIDALNAHIDMHVKNAERRNLEQTKILHRCKTCKISFPSARSLHLHERMHKPIIAKKTEVTAVPAVYDPSGERDMTLNLDTFSCPICHKIFYTQYEEVHMKSHGEEDDFVCTVCNKKFYSQENLNMHARAHSATKNFSCSHCKKTFTNFESLKEHSSGVCQMRKYDCSFCGRKFSRPHEKVKHERIHTGDKPHICEICGKSFRVSYCLTLHMRTHTGVRPYKCSHCGKRFKSHSVFNHHLSTHSDERPYKCPFCPKAFKTSVQLAGHKNSHTKPFTCNVCNRPFASLYAVRGHMETHKRENNLKYECWTCGAIYARAFALRDHLMSQHNKEMKDNNPPDLLGDNSAVTILSMSDDMMVDLDVKCDVEAVRVDEFIPKEVVSKSDLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -