Dhel013549.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- wdn
- Assembly
- GCA_028583605.1
- Location
- CM053329.1:13309767-13326280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0091 1.2 10.7 0.2 2 20 186 204 185 205 0.95 2 10 0.74 99 4.7 5.3 1 19 214 232 214 236 0.90 3 10 2.2e-05 0.0029 18.9 1.5 1 23 242 265 242 265 0.95 4 10 4.6e-06 0.00061 21.1 0.4 1 23 271 293 271 293 0.98 5 10 5.7e-05 0.0077 17.6 0.2 1 23 301 323 301 323 0.98 6 10 8.1e-07 0.00011 23.4 1.0 1 23 329 351 329 351 0.97 7 10 1.4e-06 0.00018 22.7 4.2 1 23 357 379 357 379 0.96 8 10 0.00043 0.058 14.8 2.3 1 23 385 407 385 407 0.97 9 10 0.00029 0.038 15.4 0.8 1 23 413 435 413 435 0.97 10 10 1.7e-05 0.0023 19.2 3.5 1 23 441 464 441 464 0.98
Sequence Information
- Coding Sequence
- ATGAGGCACATTCCCGGTAAACAATCCGCTGGTTTAGACGTTAAACACGATTATTTGGAATCCCTCGATGAAATCAAAGAAGAAATACCCAATATACTACTCGAACACTGCCAGAATTTAATCCAAAGCGACGACAGTCTGATCGAGGGCCCCATAGATTTAGATTTGAACCAAGATAGCGACAGCTGTGATAATGCCGACCCCGTGACTGAGCACAAAACGCGTAGAAGAAGAAAGTCGCTTTTACCCCAAAGGGCCATCCAGGCATCCAACGGGGAGAACTCCAACGAAAACAGTTCGGAGTCATCGCAGGAAGTTCCAGAATTGGAATCTGATAACTCGAAAAGTGTGATCAGTTCAAACACAGGGGATACTCTGCCTGATATCAATGACGAGGATATTTTTAGAGACTTGAATGAAGATAATGatgcTGATTTGTTGCTCGAAATCAATGAAGAGGATATTTTTAAGGATCTTCAGGATGAAGTTGGGGAAAAAATCGATGATGAAATTATGGATAACGTAAAGGAAGAGTGGAGAACACATTGGGGTGTAAAATGTAACATGTGCGAGCAAGTTTTCTCATTCAAAGTAGATTTTGATAGACATTACGTCGCAACGTATGGTTTAACTCCAGTATACACTTGCACAGTTTGCAATAAAACTGCCGAGAAATATTCCACGTTTCGATCACACTGCTATCGTCATATAACCGAGGGTAGATACAAATGTAAGGATTGCCAGAAGGGATTTAGCCTGCAAAGTATGTTACATGTACATATTTTGGCCAAACATATTAAAGCTAAACCGTACATGTGCGAAGAATGTGGACGTAGTTTCGTGACAAAACCTGGACTGAAGATTCACTCGAAGAAACACAAGAGCGAGTCGAAGGAAGACTATCCGTGCGTAGTTTGTGGGAAAGTTTTACATACGCGTGGGGGTTTAACTTCACATATGAATGTCCATCGACTGGGACGAAGATTCATGTGTGACGTATGCGGTAAGACTTTCACCCAAAAAGTCAATATGCAACAACACGTCAAACAACACACAGGAGATAAACCCTACAGATGCGACAAATGCGGTAAAACGTTTTCAGAGAAGTCCCACCTCGCCAGACACTACAGCTTCCATAGCGACCAAAGACCGTTCAAATGCGAAGTGTGCCAAAAAATGTACAAGACTGAACGCTGCCTAAAAGTCCATGGTTTGGTCCATGCGGCCGCCAGACCATTCATCTGCGGTTACTGCGGTAAAGGATTCCTTAGCAGCACCAAATTGAAGCAGCATTACAATATCCATACGGGCGAGCGCCCCTACAAATGTAAATATTGCGAGCGGACGTTCACGAATTACCCCAATTGGTTGAAACACACGCGGCGGAGACACAAAGTGGACCATCGAACGGGGGAGGGTTTGGAGGCCAAATCCTCGAAAGAGGACGAGGGCCAACCGACGACACCCGCACCGCAGTCGACGCCGGCGGTGTCTGGGACGGATGAGACGCCGCAAATTCCTGTTCAGCAGACGGCGTCCGAGCAGTTATTGGCTGATATTTCGTTGACGAAAACCGAAGAGTTGATTTTGCAGCAAGGGTTATTGAATTTCCCCATTTCCGATGATAAGTTCACCTTCTCGCAATCAATTGATCTGCTTAATGGAACAGGGACGAATGGTTCAGTGGGACTACTGGTGCCATATTTCCCGACGCCGTTGCCAAATCATCAGACAATAATTCCTCATACGACAAGCGCATCTATTCCAATTCAATTTAGTGATTTATTGCATGCACAGTATATTCAACAGACGTAA
- Protein Sequence
- MRHIPGKQSAGLDVKHDYLESLDEIKEEIPNILLEHCQNLIQSDDSLIEGPIDLDLNQDSDSCDNADPVTEHKTRRRRKSLLPQRAIQASNGENSNENSSESSQEVPELESDNSKSVISSNTGDTLPDINDEDIFRDLNEDNDADLLLEINEEDIFKDLQDEVGEKIDDEIMDNVKEEWRTHWGVKCNMCEQVFSFKVDFDRHYVATYGLTPVYTCTVCNKTAEKYSTFRSHCYRHITEGRYKCKDCQKGFSLQSMLHVHILAKHIKAKPYMCEECGRSFVTKPGLKIHSKKHKSESKEDYPCVVCGKVLHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKQHTGDKPYRCDKCGKTFSEKSHLARHYSFHSDQRPFKCEVCQKMYKTERCLKVHGLVHAAARPFICGYCGKGFLSSTKLKQHYNIHTGERPYKCKYCERTFTNYPNWLKHTRRRHKVDHRTGEGLEAKSSKEDEGQPTTPAPQSTPAVSGTDETPQIPVQQTASEQLLADISLTKTEELILQQGLLNFPISDDKFTFSQSIDLLNGTGTNGSVGLLVPYFPTPLPNHQTIIPHTTSASIPIQFSDLLHAQYIQQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -