Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053325.1:17689583-17691646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0022 0.3 12.6 0.6 1 19 179 197 179 200 0.95

2 12 2.1 2.9e+02 3.2 0.6 3 19 210 226 208 232 0.89

3 12 4.6e-07 6.2e-05 24.2 1.6 1 23 238 260 238 260 0.99

4 12 6.1e-07 8.2e-05 23.8 3.3 1 23 266 288 266 288 0.98

5 12 1.7e-05 0.0023 19.3 2.3 1 23 294 316 294 316 0.97

6 12 8.4e-05 0.011 17.1 3.3 1 23 322 344 322 344 0.97

7 12 0.024 3.2 9.4 0.2 2 23 364 385 363 385 0.95

8 12 2.7e-06 0.00036 21.8 1.2 1 23 392 414 392 414 0.95

9 12 2.4e-05 0.0032 18.8 6.1 1 23 420 442 420 442 0.99

10 12 7e-06 0.00093 20.5 4.6 1 23 448 470 448 470 0.97

11 12 6.3e-08 8.5e-06 26.9 0.3 1 23 476 498 476 498 0.98

12 12 0.072 9.6 7.8 5.1 1 21 504 524 504 525 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0022	0.3	12.6	0.6	1	19	179	197	179	200	0.95
2	12	2.1	2.9e+02	3.2	0.6	3	19	210	226	208	232	0.89
3	12	4.6e-07	6.2e-05	24.2	1.6	1	23	238	260	238	260	0.99
4	12	6.1e-07	8.2e-05	23.8	3.3	1	23	266	288	266	288	0.98
5	12	1.7e-05	0.0023	19.3	2.3	1	23	294	316	294	316	0.97
6	12	8.4e-05	0.011	17.1	3.3	1	23	322	344	322	344	0.97
7	12	0.024	3.2	9.4	0.2	2	23	364	385	363	385	0.95
8	12	2.7e-06	0.00036	21.8	1.2	1	23	392	414	392	414	0.95
9	12	2.4e-05	0.0032	18.8	6.1	1	23	420	442	420	442	0.99
10	12	7e-06	0.00093	20.5	4.6	1	23	448	470	448	470	0.97
11	12	6.3e-08	8.5e-06	26.9	0.3	1	23	476	498	476	498	0.98
12	12	0.072	9.6	7.8	5.1	1	21	504	524	504	525	0.92

Sequence Information

Coding Sequence: ATGGTcaatgaaaatgcaaaaaacttCAATTATGCCACCATTTGTCGGTGTTGTATGAGCCAAGGAGAAGTTAATATATTTGAAGCATTCTATGAAAAATCCACTTTGGTCGAGCTTCTACGGGCGTGCCTAAAAGAAGAGATtattgaagatgatagtttacCCAAATCAATATGTAAAAGTTGCATAGAATTACTGATCACCTGTTATAAATTTGTCACCAAATATCACAAAGTCCAGCAATCCCTAAAAGACTTGAGTAGTTCGAATGTTACCAATACGGATGGCGTTTTACAAAAgagtaaaataatttcagacAGCGTGATACAAAAGGATGAACTAGGTGCTCTACATGACGAcgaaataaaaacagaaatatcaaattctgATATAGAAACGGACGtgggaaacgaaattttaatcattaatGAGTACTCTGATGAAGACGATAAGCCCCTAGCCCTATTATCTAATTCGCATGTTAATAAATCGCAAATAGCCAAAacacttcgaaaaaacaatacaacaaaaatatatgaatgtcccaagtgttttaaaaaattcaattttgaaaaatcattagCTGTTCACGAGGTTAAAGGTTGTGATGTAAAGCCTAGAATTATTTGCTTGACTTGCAACGAAGCTTTCCCATATTTCAACGTTCTGGAGAAACATTGTAGAGAAAGTGGACACACGTGTTTAAAACGTTTTACTTGCAGTATTTGCCCACTTAGATTCAGAAAGAAATCTGGCTTGAACTCTCACATGAAAACCCACACAAAAGAAAAACCGCATCAGTGTGACATTTGTGGTATGAGTTTCAGCCTTAGCTCGAACCTAAAAAGACACAAAAAAAGGCACACGGGTGAAAAATCGTACTTCTGCGACCAGTGCGGCAAAGgttttattcaaaatcacaCACTGACGATTCACAAACGTCTACACAACAATGAAAGGCCTTTTTCATGCGAAGTATGCAACAAAAGGTTTAGATCGAAATCTCTCCTAACCTTTCACATGTACAAACACAAAGGTCTTCCAAATTACCACCAGAAACATTATCGAAAACACGGCGCCGTACAAGTGGAATGTCCAGTTTGCAAAAAGTTGTTAACAAGGAGTGGACTATACACTCACATGAAAATTCAACATGGCGGCGGCGACCAAAGATTTCTCTGCAACGAATGTGGCAAAATGTGCACCTCGAAGAAAGCTTTGGAAATCCACATGAACATACACACGCGGCAAGTCAGTTTTCAGTGCGACGTTTGTCTGAAGTCATTTCACCATCAAAGTTACTTGAAGACGCATCAGAGGATACATTCTGGTGAACGACCGCATTGCTGCGACGTTTGTGGCAAAACTTTCGTACAACGGGCACATTTAGACGGTCACATGCGTACACATACAGGGGCGAAACCCTACGCTTGCACGTATTGCGATAAATCGTTCGCTTTGAATGGTAATTTGAAGGTGCATATGAGAATTCATACTGGGGAAACCCCCCATCATTGTTCAATGTGCGATAAGGGGTTTTTTGACTCAAGCAGTAAGAGAAAACATGAGAAGCATTGTGCCCTTTTACTTAAATATAATCCCAATAAGTAA
Protein Sequence: MVNENAKNFNYATICRCCMSQGEVNIFEAFYEKSTLVELLRACLKEEIIEDDSLPKSICKSCIELLITCYKFVTKYHKVQQSLKDLSSSNVTNTDGVLQKSKIISDSVIQKDELGALHDDEIKTEISNSDIETDVGNEILIINEYSDEDDKPLALLSNSHVNKSQIAKTLRKNNTTKIYECPKCFKKFNFEKSLAVHEVKGCDVKPRIICLTCNEAFPYFNVLEKHCRESGHTCLKRFTCSICPLRFRKKSGLNSHMKTHTKEKPHQCDICGMSFSLSSNLKRHKKRHTGEKSYFCDQCGKGFIQNHTLTIHKRLHNNERPFSCEVCNKRFRSKSLLTFHMYKHKGLPNYHQKHYRKHGAVQVECPVCKKLLTRSGLYTHMKIQHGGGDQRFLCNECGKMCTSKKALEIHMNIHTRQVSFQCDVCLKSFHHQSYLKTHQRIHSGERPHCCDVCGKTFVQRAHLDGHMRTHTGAKPYACTYCDKSFALNGNLKVHMRIHTGETPHHCSMCDKGFFDSSSKRKHEKHCALLLKYNPNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -