Dhel025807.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053334.1:19951834-19968292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0019 0.26 12.8 1.2 1 23 12 35 12 35 0.95 2 26 0.07 9.3 7.9 6.6 1 23 41 63 41 63 0.98 3 26 0.41 54 5.5 0.1 2 23 66 88 65 88 0.92 4 26 0.026 3.6 9.2 0.9 1 23 91 114 91 114 0.93 5 26 6.3e-05 0.0085 17.5 1.2 1 23 133 156 133 156 0.95 6 26 0.0084 1.1 10.8 3.2 1 23 162 184 162 184 0.97 7 26 0.00091 0.12 13.8 0.2 2 23 187 209 186 209 0.97 8 26 0.39 53 5.5 2.1 1 23 213 236 213 236 0.93 9 26 0.035 4.7 8.8 2.2 1 23 242 265 242 265 0.97 10 26 0.0024 0.33 12.5 5.7 1 23 270 293 270 293 0.97 11 26 0.0051 0.68 11.5 1.7 1 23 303 326 303 326 0.92 12 26 0.0013 0.17 13.4 1.7 1 23 332 354 332 354 0.99 13 26 0.072 9.7 7.8 1.0 2 22 357 377 356 380 0.89 14 26 0.062 8.3 8.0 2.9 2 23 394 416 393 416 0.94 15 26 0.019 2.6 9.7 1.7 1 23 422 445 422 445 0.95 16 26 0.016 2.1 9.9 0.4 1 23 451 474 451 474 0.96 17 26 1.1e-05 0.0015 19.9 1.1 2 23 675 697 674 697 0.96 18 26 0.22 30 6.3 0.2 5 21 707 723 706 724 0.92 19 26 0.00049 0.066 14.7 0.2 1 23 727 750 727 750 0.97 20 26 0.0018 0.24 12.9 2.7 1 23 753 776 753 776 0.93 21 26 1.4 1.8e+02 3.8 2.9 1 23 782 805 782 805 0.96 22 26 0.0007 0.095 14.2 1.5 1 23 810 833 810 833 0.95 23 26 0.026 3.5 9.2 1.3 2 23 840 862 839 862 0.96 24 26 0.01 1.4 10.5 0.6 1 23 868 891 868 891 0.95 25 26 0.0014 0.19 13.2 0.3 1 23 896 919 896 919 0.94 26 26 0.13 17 7.1 1.1 1 23 925 948 925 948 0.95
Sequence Information
- Coding Sequence
- ATGCACATCGGGTTATATGAGAAGTCGCAAAAATTCCATTGCGAATACTGCGATTATACATCAAAGCGAATGGACGCGGTCAAGAGGCACATTAACGGAGTTCACTTAAAAAACTATCCCTATAAATGCGACATTTGCAACTTTCGGTGCCTGCAAAAAAGCGCCCTGAAGCATCACAAGTCGACACATATTAAAAAGTGCGAATTCTGCGATTATATTGGGATAAATCGGGAAGCGCTTTCGTCACATAGAATCGCGACTCATAGCAGGTACAAATGCCAGTTTTGCGACTATGAAAGCAAAAACAAAGCGCTTATGGCAAAGCATGAAAATGACACTCACCCTAAGGAACTAGGAGAACAAGCAACGCGTCCGGATATCATCAAGTCACAATTATTCCATTGCCAATACTGTGATTATGCAGCGAAGCAAAAGGGCAACCTCAAAAGGCACATTAACGGAGTCCACTTAAAGAACCAACTTTTTAAATGCGACATTTGTAGCTTTCAGTGTGTAGAAAATAGCAGTTTAAAGCGACACAAGTTGCTGCATTCTAAAAAATGCAAATACTGCGATTATGTTGCTGTAACTCAAGAAGAGCTTTCGGCGCATAGAATAACGAATCACAGCATCATGCACAAATGCCGGTTTTGCGACTATACGGCCAAAAAGAAAGCGCGCCTGAGGGAGCATGAAAATGGCATCcatcttaaaaaagaaaagtactCGTGTACCGATTGCAGCTATACAGCTTTGTACAAATCCAATTTGAAAATGCATAGAAAACGAATGCataaagaaatttattttaactgcGATAAATGCGACTACAAAACGACAACGCATAAAAGTCTTAAAAACCACAGAAACACGAGTCACCCTAGGTCATATGGGGAATCACAATTATTCCATTGCGAGTTTTGTAATTATAGAACAAATAAGAAAGGCAATCTTAAAATTCACATAGACGGAGTTCACTTGAAAAACAATTCGTATAAGTGCGATATTTGCAGCTTTGAGACtgtacaaaaattcaatttgaagcTGCATAAGTTGACGCattttaaaaagtgcaaataCTGTGATTATGTCGGGATAAATCGAAAAGCGCTTTTGGCGCATAGCCAGGTTTGCGACCATGTGAGCAAACGCAAAGCACctcaaaaaaaagaacttctCTACTGCGCTCATTGCGAGTACACGTCTCCTAACAAATCGAGGTTGGCGAAGCATTTACACAGCAATCATGCGCTTATTAAGGCGTTTAAATGCATACAGTGCGACTTCGCATGCAAGGATAGGGACGAACTGATCAGACATTTTAAGGTGGAGCATATGAATAATTATCATTTTGAGTGCAATGACTGCGGGTTTCTCGCCCAAACTAAATTCAAGTTAAAAGCTCATATTTTagtcaaacatttgaaagaGAGACAATTCCAGTGCAATTTTTGCTCATATCGTGCTTTTGCTAAAAGTCGTATTGATTTGCACGCTAAAGCAAAACACAAAGAAGCTTTTATGAAAAGAGAATCGTTTGAAGGCGAACTTGTTTGCTGGAAAAGACATTTCTTCATTTTAGAATGTAAGCAGatagtttttgaatattccgaATCTGATGGCGTAGAAAATTCCAACAATGTACAGATAGGAAAGCTGGTGGACAAAATTAAACAGGAACCCGGTGATAACCTAGATAATATCCACGAAATTGGCCAGGGTACATTTGAACTACTTACCCCTGTTGAATTAAAAACTGAAGATGATGCGTCAAGTGCAACAGAATTAGAAGTTGGAGGAAAgagtaaatttgaactactcccACCTAGTGAATTAAAAACTGAACCGAATGATGCATCAAGTGAAATAGATTTAGAGGTTGAATTAAAAACAGAAGTAGAAGGCTATAACAATTTACCTGAAGCTTCATTAGAAACCGAAATTGATAGAACAAACAATCGGAAGAAAAGTCGATGGAAAGAGCCAGGTAACAAACTAGATTCTATCTTCAAATCATTATTGCAATGCGACTACTGTGATTATACAACGAAAGTAAAAAGCAATCTCAGAATGCACCTAAGAAGAATTCACTTAAAAACCTGGAGGTATAAACGTGACATTTGCAACTTTCAGTATGTACGAAAAATCCACTTGAAGCTCCATATCAAATCGTTGTATTTCAGGTGCAGATACTGCGATTATGTTGGGACAAATCAAGAAGCGCTTTTGGCACATAGAATCACGAATCACAGCATGCATAAATGTCGGTTTTGCGATTATGTGACCAAACGCAAAGAGCATCTGGAGGCGCATGAGAATGCCATCcatcttaaaaaagaaaattactcTTGTTCTGACTGCAGCTACACAACTCTGTACAAATGCAGCATGTGGACGCATATAAGATTAATGCATAAGCAATTGTACTTTAGCTGCGACAGATGCGATTACAAGACGAAAACGCAGAGATATCTCAAAAGTCATATAAATGCCATTCACACTAAATTGGAACTAGTCTACTGCGCCCATTGCGATTACACTGCTACCCTCAAGTCGCGTTTGGCTACGCATTTACGCAAGAATCACGCGCTTACAGCGTCGTTTAAATGTGAAAAGTGCAATTTCGCATCCAAGGAGATGAGCGAGCTTGTCAGACATACGAAGGCAGATCATGGGAATTGCCGCTTCGAGTGCAATAACTGCGACTATGTGgccaaaactaaaatattgttaaaaagtcatattttagcCAAACATCTCAAACAACGACCGTTCCAGTGCAAGCTTTGTCCGTATGCCGGATTTACCAGTTCACGTCTGTTTCTGCATACGAAAGCGAAACATAAAGAAGTTCGTAAAAAGCTAATCAAAGACGAATTtgttttctgttaa
- Protein Sequence
- MHIGLYEKSQKFHCEYCDYTSKRMDAVKRHINGVHLKNYPYKCDICNFRCLQKSALKHHKSTHIKKCEFCDYIGINREALSSHRIATHSRYKCQFCDYESKNKALMAKHENDTHPKELGEQATRPDIIKSQLFHCQYCDYAAKQKGNLKRHINGVHLKNQLFKCDICSFQCVENSSLKRHKLLHSKKCKYCDYVAVTQEELSAHRITNHSIMHKCRFCDYTAKKKARLREHENGIHLKKEKYSCTDCSYTALYKSNLKMHRKRMHKEIYFNCDKCDYKTTTHKSLKNHRNTSHPRSYGESQLFHCEFCNYRTNKKGNLKIHIDGVHLKNNSYKCDICSFETVQKFNLKLHKLTHFKKCKYCDYVGINRKALLAHSQVCDHVSKRKAPQKKELLYCAHCEYTSPNKSRLAKHLHSNHALIKAFKCIQCDFACKDRDELIRHFKVEHMNNYHFECNDCGFLAQTKFKLKAHILVKHLKERQFQCNFCSYRAFAKSRIDLHAKAKHKEAFMKRESFEGELVCWKRHFFILECKQIVFEYSESDGVENSNNVQIGKLVDKIKQEPGDNLDNIHEIGQGTFELLTPVELKTEDDASSATELEVGGKSKFELLPPSELKTEPNDASSEIDLEVELKTEVEGYNNLPEASLETEIDRTNNRKKSRWKEPGNKLDSIFKSLLQCDYCDYTTKVKSNLRMHLRRIHLKTWRYKRDICNFQYVRKIHLKLHIKSLYFRCRYCDYVGTNQEALLAHRITNHSMHKCRFCDYVTKRKEHLEAHENAIHLKKENYSCSDCSYTTLYKCSMWTHIRLMHKQLYFSCDRCDYKTKTQRYLKSHINAIHTKLELVYCAHCDYTATLKSRLATHLRKNHALTASFKCEKCNFASKEMSELVRHTKADHGNCRFECNNCDYVAKTKILLKSHILAKHLKQRPFQCKLCPYAGFTSSRLFLHTKAKHKEVRKKLIKDEFVFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -