Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053336.1:22364999-22366976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.043 5.8 8.5 0.1 6 21 304 319 304 320 0.93

2 10 0.001 0.14 13.6 0.5 2 23 328 349 327 349 0.96

3 10 9.5e-08 1.3e-05 26.3 0.5 1 23 355 377 355 377 0.98

4 10 6e-06 0.0008 20.7 0.1 1 23 383 405 383 405 0.99

5 10 7.4e-07 9.9e-05 23.5 0.6 1 23 411 433 411 433 0.94

6 10 1.8e-09 2.4e-07 31.8 0.6 1 23 439 462 439 462 0.98

7 10 0.0002 0.027 15.9 0.8 1 20 468 487 468 490 0.92

8 10 2.7e-06 0.00036 21.8 1.2 1 23 496 518 496 519 0.96

9 10 0.0045 0.61 11.6 5.8 1 23 528 550 528 550 0.98

10 10 1.8e-05 0.0025 19.2 3.5 1 23 555 577 555 577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.043	5.8	8.5	0.1	6	21	304	319	304	320	0.93
2	10	0.001	0.14	13.6	0.5	2	23	328	349	327	349	0.96
3	10	9.5e-08	1.3e-05	26.3	0.5	1	23	355	377	355	377	0.98
4	10	6e-06	0.0008	20.7	0.1	1	23	383	405	383	405	0.99
5	10	7.4e-07	9.9e-05	23.5	0.6	1	23	411	433	411	433	0.94
6	10	1.8e-09	2.4e-07	31.8	0.6	1	23	439	462	439	462	0.98
7	10	0.0002	0.027	15.9	0.8	1	20	468	487	468	490	0.92
8	10	2.7e-06	0.00036	21.8	1.2	1	23	496	518	496	519	0.96
9	10	0.0045	0.61	11.6	5.8	1	23	528	550	528	550	0.98
10	10	1.8e-05	0.0025	19.2	3.5	1	23	555	577	555	577	0.98

Sequence Information

Coding Sequence: ATGAATCTCGAAGGGCTTGATTGGGATAAGCGTTGTCGATTTTGTCTAAATACATACAGCATGGGTCATTTAAGAAGTCTTTTCCTTCCCAGGTTAAACAAAATGATTGAACCTTGTTTTTCAATTAATGTATCTATTGAGGATGGGTTACCTTCACAGATATGCAATAAATGCACCATTTCAATGGTGAGGTACTAcgactttaggaaaaaagtaatcaACAATGACAACTTGttgaagagaaatttaaaaactgcgaACAAGAAAAGCGACATATTGAACATCGCCGTCAGCAAGGCGGAAATTGAACAAATCAATGAGGTGCTTCGTGATGAATATTCAATCGAAACAAAACCTGGCTTCAAGGAAGCAGCTGAAAAAATTCTCTCCCAACAAGAAGAAAGAACGTTAGCTACGGAGCAGAAAATGGATGTAAATGATATTTCCATAATTCAAGAGTGCTGCGATAGCAATTTGAGTACTGACATCTGCGGTAATAATGAAATATTTGGTGCAAAGgacgaatattttgaatttatgaacGATGCACTTTCCAATAAAGGAAGTAAACCCCATCATGAATCAGAGGatggaaatttggaatcttcTTTTGGCGAACTACCCTCAATAATCACAATAACAACAGGTAAAGATGGAAGTAAATCAAACATTATTACTCAAACGATAGAATTACCGCAAGAGCCCCCGCCTCTTGTGCCAATAACTAGAACTGAAAAGCTCGAGATACCCCCTAAGtcttcaaattctgaaatttctttgTTTGCATCAAATGAAAAGCCAAATACCAGTGATAAAACCTATTTATCCAAAGATACCCCACCTCTGATACCTATCAAACCAAATCTGCCATGCATCATTGAAAAAGCTCCAAACGTTATCCTCCAGTGCTGTGACAAAACGTTCGAGAGCGTTTCTGAACTGAAAACGCACAAGACGACCGACTGCGCCCAAAAACTCCTGCAGTGCAATATCTGCAAGaaagaatttgaggaaaaaaagaagCTAGTGGGTCATTTGAAAGGGCACATGATCCGCAAAGATTACGCCTGTAAAATCTGCGGTAAACGCTACCCAAACCCTAGTACATTCCGAGTGCACATGCGGTCGCATACTGGGGAGAAACCGTTTAAGTGTGAGGTGTGTAATAAGGGTTTCACGCGGTGGGCCGGCGTGGTGGGGCACATGAAGACCCATGGGGACTGCAAGCCGTACCAGTGCGATACCTGCGGCAAAGCCTTTAAGATGTCTTCGAATCTGATTAGGCATAAGGTTCTTCACACCGGCACCCTCCCCTACGTGTGTAACTACTGCGGGAAGGCGTTCAGTCAGTCTGATAACTTGCAACTACACATCAGAACCTATCACACCAATGAGAGGCCATATCTTTGCAGCGAGTGTGGCAAAGGGTTCGTTTCCCACACAAGGCTGAATCGCCACATGTGGGTACATTCTGGTTTTAAGCCTTATAAGTGTTCAGTTTGCCCTAAGGAGTATTCAAATTCAAACGATTTGAAAATACATGAACGAGTGCATCACAAGACTGAGGCAGACGATAGGCCCTACGCCTGTGACAAGTGTGGGATGAAGTTTTACCAGCGGTGTAGATTGAAAACGCACTTTAAGACGCATCTGCTGAGGCCTTATGAATGCAACAAGTGTGGTAAAGCTTTCAGGACTTGTCAGCTTTTAGTAAAACATTCCCAGAAGCATTTGTatgaagaagaaattttggatCCTTTGTCAATTGAACCAAAGATAGTGAATGAATAG
Protein Sequence: MNLEGLDWDKRCRFCLNTYSMGHLRSLFLPRLNKMIEPCFSINVSIEDGLPSQICNKCTISMVRYYDFRKKVINNDNLLKRNLKTANKKSDILNIAVSKAEIEQINEVLRDEYSIETKPGFKEAAEKILSQQEERTLATEQKMDVNDISIIQECCDSNLSTDICGNNEIFGAKDEYFEFMNDALSNKGSKPHHESEDGNLESSFGELPSIITITTGKDGSKSNIITQTIELPQEPPPLVPITRTEKLEIPPKSSNSEISLFASNEKPNTSDKTYLSKDTPPLIPIKPNLPCIIEKAPNVILQCCDKTFESVSELKTHKTTDCAQKLLQCNICKKEFEEKKKLVGHLKGHMIRKDYACKICGKRYPNPSTFRVHMRSHTGEKPFKCEVCNKGFTRWAGVVGHMKTHGDCKPYQCDTCGKAFKMSSNLIRHKVLHTGTLPYVCNYCGKAFSQSDNLQLHIRTYHTNERPYLCSECGKGFVSHTRLNRHMWVHSGFKPYKCSVCPKEYSNSNDLKIHERVHHKTEADDRPYACDKCGMKFYQRCRLKTHFKTHLLRPYECNKCGKAFRTCQLLVKHSQKHLYEEEILDPLSIEPKIVNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -