Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053334.1:18222407-18224695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.1e-05 0.0096 17.3 0.7 3 23 177 198 175 198 0.96

2 11 0.00052 0.07 14.6 1.3 1 23 204 226 204 226 0.98

3 11 6.1e-06 0.00081 20.7 1.5 1 23 232 254 232 254 0.97

4 11 9.2e-05 0.012 17.0 0.3 1 23 260 282 260 282 0.98

5 11 4.5e-07 6.1e-05 24.2 1.7 1 23 288 310 288 310 0.98

6 11 3.7e-05 0.0049 18.2 1.1 1 23 316 339 316 339 0.96

7 11 8.5e-07 0.00011 23.4 0.4 2 23 346 367 345 367 0.97

8 11 1.9e-06 0.00025 22.3 1.8 1 23 373 395 373 395 0.97

9 11 9.6e-06 0.0013 20.0 2.7 1 23 401 423 401 423 0.98

10 11 3.3e-05 0.0044 18.4 2.1 1 23 429 451 429 451 0.98

11 11 0.0014 0.19 13.2 2.4 2 23 456 478 455 478 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.1e-05	0.0096	17.3	0.7	3	23	177	198	175	198	0.96
2	11	0.00052	0.07	14.6	1.3	1	23	204	226	204	226	0.98
3	11	6.1e-06	0.00081	20.7	1.5	1	23	232	254	232	254	0.97
4	11	9.2e-05	0.012	17.0	0.3	1	23	260	282	260	282	0.98
5	11	4.5e-07	6.1e-05	24.2	1.7	1	23	288	310	288	310	0.98
6	11	3.7e-05	0.0049	18.2	1.1	1	23	316	339	316	339	0.96
7	11	8.5e-07	0.00011	23.4	0.4	2	23	346	367	345	367	0.97
8	11	1.9e-06	0.00025	22.3	1.8	1	23	373	395	373	395	0.97
9	11	9.6e-06	0.0013	20.0	2.7	1	23	401	423	401	423	0.98
10	11	3.3e-05	0.0044	18.4	2.1	1	23	429	451	429	451	0.98
11	11	0.0014	0.19	13.2	2.4	2	23	456	478	455	478	0.96

Sequence Information

Coding Sequence: ATGGCGGAGGATGGGAAAAAATTAATGCCGCTTTGCCGAACCTGCTTCAGGGAATCCGAAAGTTATAGGTCTCTTGCCGACGAAGTTGAAGGGGATCTTACCATATCAAAAGTACTCAGTATTTGCGTCCCAGAAGTGaatgttcAGATTTCCGAAAATCCCATCGTTTGTCAGCTTTGCGCCGACGAGCTGATTCAAGTGCTTTTCATTCAAAAAGAAGTGTTTGGCTACGGAAGAGTTGAATTGTACGAGGTCATTAAAAATGaggaaattgttaaaaatcctTATGCGGACACTGCCATCACATACGAACCTGAAAAGAAAACCCTGGAGACGACGCAGTCAAATGAATTGTTGCCTGTTAAGCAAGAACCTGCCTATGAAGGTTACGGAGAGAGTAACATACGTGTTAAGGATGAGCCAATGTCTGATGACGaggaagatgatgatgatgaagaagaattAGATTTGTTAGAGTTGCGATTGAGGCAAGAGATACGTAGAAAAGGCAACAGTAAGCCTTCAAACTGTTCTGTTTGCAACGAAGCATTCAGATCAATTAAAGAATTGAAGACGCATCTGAAGACGTTGCACCCTGGTCACTATCTATACAAATGCGAGGTTTGCAACAGAGGTTTCCTAAGCCAATCGTCTTTTAACGATCACAAGAAGGTGCACAGCAATCTTAAGCCATTCATTTGCGAGCAATGCGGTCAGCGATTCGAATACAGGTCGAAGTTGAATCGACATTTGTTGAAGCATACAGACGAGAAGAATTTCGTCTGTGAGTTGTGTCAGAAGCCGTTCAGTACGATCGAAGGTTTGCGGATGCATAAAAACTCGCACGAAGGGCACAAACCGTTCAGTTGCGAGGAATGCGGGAAGTTTTTCGCTAGGAAAATTTACCTGAAATATCATCTTAGAACGCATAAGAACGAGAAACCGTTCAGCTGCAATATGTGCGACAAGAGGTACTATTCTAACGGGAAGCTCCAGGATCATTTGAAATTGGTGCACCTCAACGCGCCCCCGCAGGTCTGCGAGGTTTGCGGCAAGGGCTACCCTAGTAGgTACACCCTAAAAAATCACATGAAAACCCACAACGGAGAGCGCAACCACGTttgcgaaatttgcaaaaaagcctTCTATGAACCCTCGCATTTGACTCTCCATATGAGGGGCCACACCGGGGAGAGACCCTACGAGTGCAAGCTGTGTTCTAAGCGATTCACGCAGGCCAACTGTCTGAAATCACATATGGCGGTCCACAACGGGGTCAAACCATACAAGTGCGACTTATGCGATAAGTCGTTCTATGAAAAATCGCGCCTGAATATGCACAGGAAAGGGCATTTAGGCGAAATCAAGTGCgatatttgtcaaaatacttttaCCACTTTCGCCTATTTGAAATATCATAAGAAGAGGTTCCATAGCGATGTCGCTGCTAGCGACAGTAATAATTCGACGGATGGTGATAAAACAAAGACAAAACGACCTGATGGAGAGCAAACTGATAATCTTGCTGCCGAGTTCTCTAAAGAAATGTTATTGGGTAAAAGTGAAGAAAATTCCAATGAAGactgcaataaaaattaa
Protein Sequence: MAEDGKKLMPLCRTCFRESESYRSLADEVEGDLTISKVLSICVPEVNVQISENPIVCQLCADELIQVLFIQKEVFGYGRVELYEVIKNEEIVKNPYADTAITYEPEKKTLETTQSNELLPVKQEPAYEGYGESNIRVKDEPMSDDEEDDDDEEELDLLELRLRQEIRRKGNSKPSNCSVCNEAFRSIKELKTHLKTLHPGHYLYKCEVCNRGFLSQSSFNDHKKVHSNLKPFICEQCGQRFEYRSKLNRHLLKHTDEKNFVCELCQKPFSTIEGLRMHKNSHEGHKPFSCEECGKFFARKIYLKYHLRTHKNEKPFSCNMCDKRYYSNGKLQDHLKLVHLNAPPQVCEVCGKGYPSRYTLKNHMKTHNGERNHVCEICKKAFYEPSHLTLHMRGHTGERPYECKLCSKRFTQANCLKSHMAVHNGVKPYKCDLCDKSFYEKSRLNMHRKGHLGEIKCDICQNTFTTFAYLKYHKKRFHSDVAASDSNNSTDGDKTKTKRPDGEQTDNLAAEFSKEMLLGKSEENSNEDCNKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -