Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053329.1:33981055-33986902[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 13 7.4 3.0 2 23 159 181 158 181 0.94

2 10 0.08 11 7.7 0.1 1 23 187 210 187 210 0.96

3 10 6.7e-07 9.1e-05 23.7 2.4 1 23 216 238 216 238 0.97

4 10 5.4e-08 7.3e-06 27.1 2.9 1 23 244 266 244 266 0.99

5 10 7.8e-08 1e-05 26.6 0.3 1 23 272 294 272 294 0.97

6 10 1.1e-05 0.0015 19.8 1.3 3 23 302 322 300 322 0.98

7 10 5.4e-06 0.00072 20.8 2.6 1 23 453 475 453 475 0.97

8 10 1.1e-06 0.00015 23.0 1.0 1 23 481 503 481 503 0.98

9 10 1.1e-07 1.5e-05 26.1 2.7 1 23 509 531 509 531 0.99

10 10 2.5e-05 0.0034 18.7 3.3 1 23 537 559 537 560 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	13	7.4	3.0	2	23	159	181	158	181	0.94
2	10	0.08	11	7.7	0.1	1	23	187	210	187	210	0.96
3	10	6.7e-07	9.1e-05	23.7	2.4	1	23	216	238	216	238	0.97
4	10	5.4e-08	7.3e-06	27.1	2.9	1	23	244	266	244	266	0.99
5	10	7.8e-08	1e-05	26.6	0.3	1	23	272	294	272	294	0.97
6	10	1.1e-05	0.0015	19.8	1.3	3	23	302	322	300	322	0.98
7	10	5.4e-06	0.00072	20.8	2.6	1	23	453	475	453	475	0.97
8	10	1.1e-06	0.00015	23.0	1.0	1	23	481	503	481	503	0.98
9	10	1.1e-07	1.5e-05	26.1	2.7	1	23	509	531	509	531	0.99
10	10	2.5e-05	0.0034	18.7	3.3	1	23	537	559	537	560	0.94

Sequence Information

Coding Sequence: ATGGACGGAATGGAAAATTGGCGTAGTTATGCAACGATGTGCAGGCTGTGCTTGCAGAAGGACGGCTTCATGTTGGGCATTTTTAATCATATTCAAGGCAAAGACAAAAGTATTTATAAGAAAATCATGGACTGCACGGCGCTACAAatttccgTTGGCGACGGTCTACCAAATGTGATATGCCACAGATGCctcttcaaaatcgaattttgcctAGAATTCCGCCAACTGTGCTTCGTATCGGACGCGACCCTCCGACAAATAAACGGCGTAGCGAACAAAGACGCCGAAAGCGGCAGCAATACACCTCATGTGCCATTTTACGAGCAACTGGCGACCGGAAGCGAAGATGTGGTGATGGTGGTTGACCCATCCGCTATGGACTACGATTCTGAATACGAATCCGACAACAATGAGCGACAAAGCGACGAAAACGTCGAAGTTAACGAAGGCTACGACAACAAAAACGTGTCAATGTGCAAATTTTGCGACCACGCTTTTACTGATAAAGCGGAGTGCACCCTACACGAGAACACCGCGCACAACTTGGAAGTGCCGTACGCTTGCGCGGAATGCAGCATGGATTTTGGCGATAGATTGCAGTACTCGGCGCATTTGAAGAACGTTCACCAGAACGAAAAACCGTACAATTGTCCCCAATGTCATAGAACGTTTGCGCGGCGTTCGGATTTAAGAAAACACACGATTGTACACACCGGGATTAAACCGTACACTTGCACGGTTTGCTTTAAATCGTTTTCAAGGAATACGAATTTGTCAAAGCATATGCGTATTCATCTGAGTAGGAAACCGTTCGTGTGTCCGAAATGTCCAAAGTCGTTTACGTCGAAAGCTGAATTGACTAGACACACCGCCGTTCACTTCGGTAATAAACCATTCGGTTGTAATTATTGCCCGATGAGTTTCGAGCGGAAAGATAAGTTGCAGAGGCATGAGAAGCGTCATTTTCCTCAGGAAAACGCCGAGGATAAATCCCAGGAGTTGCAGATGTTAAGGGAGAATTTAATGGGGGATTATTCGTACGTCGCGCCGCCAGCGAACGATTCCGAAAACAACAACGACCAAGACAAAGATGGTTGGGCTAGCTCGGAAAACATGGTCATCAACGTCGACCCATTTAACCACAACAATCTAGAAATCACTCCCAAGAGCGAGCCCCTCTCGGAGTCGGACGCCAACGCCCCGGATTTCGGCCTCTTAGGCGACCAGAACACCGATACGGCCTACCATGACGTGAATGGGCTGCCTCCCGTTCCCGAGCATATAACAGGTGATAGTTTCGCGAAGGCTGCTTTGGAAAATTCCTTGAGGCTAGAGACTGAAAATTCGAAGACTTATTCGTGTCAGACTTGTAGCAAAAGTTTTTCCAGCAAGGAGAATTTGCGGTATCACCGAGCCAGTCATTCGGGCGTTAGACCCTTCGTTTGTAACACCTGTAATAAGTCGTTTGTGAGGAAGAGGGAGTTGGATCGGCATATAGTGACCCATAGCGGCATGAAGCCGTTCAAGTGTACTAAATGTAGTAAAAGTTTTGGGAGGAAAGACAAATTAATTAGGCATATGAGGATTCATGATGTTAATCGGCACCATGCTTGTAGTATTTGCAAAGCGACGTTTAATAGGCGGGACACTTTGGCACAACATATAAAAACGCATCACAGGAAAGAGACTGAGTAG
Protein Sequence: MDGMENWRSYATMCRLCLQKDGFMLGIFNHIQGKDKSIYKKIMDCTALQISVGDGLPNVICHRCLFKIEFCLEFRQLCFVSDATLRQINGVANKDAESGSNTPHVPFYEQLATGSEDVVMVVDPSAMDYDSEYESDNNERQSDENVEVNEGYDNKNVSMCKFCDHAFTDKAECTLHENTAHNLEVPYACAECSMDFGDRLQYSAHLKNVHQNEKPYNCPQCHRTFARRSDLRKHTIVHTGIKPYTCTVCFKSFSRNTNLSKHMRIHLSRKPFVCPKCPKSFTSKAELTRHTAVHFGNKPFGCNYCPMSFERKDKLQRHEKRHFPQENAEDKSQELQMLRENLMGDYSYVAPPANDSENNNDQDKDGWASSENMVINVDPFNHNNLEITPKSEPLSESDANAPDFGLLGDQNTDTAYHDVNGLPPVPEHITGDSFAKAALENSLRLETENSKTYSCQTCSKSFSSKENLRYHRASHSGVRPFVCNTCNKSFVRKRELDRHIVTHSGMKPFKCTKCSKSFGRKDKLIRHMRIHDVNRHHACSICKATFNRRDTLAQHIKTHHRKETE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -