Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053336.1:20446020-20452137[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.6e-05 0.0076 17.6 2.3 2 23 201 222 200 222 0.98

2 11 5.6e-07 7.5e-05 23.9 1.8 1 23 228 250 228 250 0.99

3 11 9.7e-05 0.013 16.9 3.9 1 23 258 280 258 280 0.97

4 11 0.00044 0.059 14.8 1.5 1 23 286 308 286 308 0.98

5 11 0.00022 0.029 15.8 1.0 1 23 320 342 320 342 0.96

6 11 9.2e-07 0.00012 23.2 2.8 1 23 348 370 348 370 0.96

7 11 9.5e-06 0.0013 20.1 0.5 1 23 376 398 376 398 0.99

8 11 7.8e-07 0.0001 23.5 0.6 1 23 404 426 404 426 0.98

9 11 6.6e-05 0.0088 17.4 3.4 2 23 433 454 432 454 0.97

10 11 2.9e-05 0.0039 18.5 0.1 1 23 460 482 460 482 0.99

11 11 5.3e-08 7.2e-06 27.1 0.5 1 23 488 510 488 510 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.6e-05	0.0076	17.6	2.3	2	23	201	222	200	222	0.98
2	11	5.6e-07	7.5e-05	23.9	1.8	1	23	228	250	228	250	0.99
3	11	9.7e-05	0.013	16.9	3.9	1	23	258	280	258	280	0.97
4	11	0.00044	0.059	14.8	1.5	1	23	286	308	286	308	0.98
5	11	0.00022	0.029	15.8	1.0	1	23	320	342	320	342	0.96
6	11	9.2e-07	0.00012	23.2	2.8	1	23	348	370	348	370	0.96
7	11	9.5e-06	0.0013	20.1	0.5	1	23	376	398	376	398	0.99
8	11	7.8e-07	0.0001	23.5	0.6	1	23	404	426	404	426	0.98
9	11	6.6e-05	0.0088	17.4	3.4	2	23	433	454	432	454	0.97
10	11	2.9e-05	0.0039	18.5	0.1	1	23	460	482	460	482	0.99
11	11	5.3e-08	7.2e-06	27.1	0.5	1	23	488	510	488	510	0.98

Sequence Information

Coding Sequence: ATGGAGGTTATTAAGTCCGAATCGAGCGCTTtcgatataaataaaatatgccGATCTTGTTTGagtgaaaaaggtgaaatgagGTCGGTTTTTTTGACCGACGATAGTACGGGGCAGCCCGTGGTGCTGGCCGAAATGTTGATGGGATTTACTAACGTACAGGTCGAAACTGGAGATGGGTTGCCAGGATTAGTATGTCTCGAATGTGTTCACAACATATGCAGCGCGTTTTCCTTCAAGCAGTTATGCGAACAATCAGATGCGAATCTCAGACAATACCTCGGGAAACCccttttgcaaaaaatgtgcAAAGAAGAGGAAGCAAATCAACAAAACGACATGAATTCCAGTTTATTTCTAGACGGTTTCGGTTTCTATTCATCGTCGGGAGACAGCGACGATGACGATGATTACAAAGAAGATTTTCCTCTCCTCCAAGCAATACCAAATAACGCCAACGACGAAAAAGCCATCGCTcagcggcaactcatgaaagcCGCCAAAATACAAAAGggtaaaatgtctaaaaagaaacTCTTGGCCAAAGCCGGTAATAAAGCAGCAGCGCTCGCcgtcaaaaaaatgaaaagaaacacGAACCAGTGCGCCGTCTGCAAAAAACAATTTATCAACTTGAAATCCTTCAGAAAACATCTCCGAACGCACATAGAGGACCGCCCCTATAAATGCAAGCTGTGCCCCCGGAGTTTCACCGAAGAAAACTATTTAAACAACCACATGAGAACCCACGTACCGGAAGAACAAAAGCCTCACGAGTGTGCAGTTTGTAAGAAGCGCTTTATACACGAAACGCTCCTGAACAAGCACATGTTGAAGCATAGCGGGGAAAAACCGTTCGTTTGCAAAATTTGCAACAAGGGTTGCTATGCGGAAAACAGTCTTTTGAAGCATATGAAAATTCACGAGAAGAAGGAGGGAGATCCGGGTCTGCTAAAGCATATTTGCGACTATTGTAAGACCGAATTTCCAGATTCTCAGAGCCTTTCTGTCCATATAAAGCAACATACGGGGGATCGGCCGTTTTTGTGCAATATGTGCGGGAAATGCTTCCCGCAGCGATTCAATTTGGAGTTACATTTAAGAACCCACACAGGTGAACGCCCATTTCAGTGTGAAGTGTGTAAAAATGGTTATGTATCTAAAGCCAGTTTGAAAATTCACATGAGGACCCATACCAACGAGAGGCCTTTTGTTTGTGATTTTTGCGGCAAGGCTTTTCGCCAGTCGGGAGATTTGACCAGTCATAAACGGCTACATGGAACGGAAAAACCCATAGAATGCTCAGAGTGCCATAAAAGgtttacgACTGTGATGAAGTTAAAGTATCACATGAGAAACCACACAGGAGAGCGTCCTTATGTTTGTACTGTTTGTGGTAGAGGTTTTACTGTCAATACCATTCTACTGCGCCATATGAGGGTCCATTCAGGAGAAAGACCTTACGTATGCGTCACTTGTGGAAAAGCGTTTTCCCAGTCGAGCACTCTTAACACTCATATGAAGgtACATGCACCGTCTCCAAAATATAACAATCAAGAACAGCAACAACAGCAGCAGCAGCAACAACAACAGCATCAGCAGCAGCAGCACCAACAGCAGCAACAGCAACGCATCCTCCCCAAATTTCACACTAACGATCCTAAATTCCAAACTCAAATCCCTGTACCTCAACAGCAGGATCACACCCGCCTCATGCAACAGGACGCGCGTATGATGCAACAAGAACCGAGAATGATGCAACCAGACAACACTAGGATGCTATCCAACGATGGCAGCCGTATTATAAGCGACAATAGTCATTTATTAACGGACGCAAGGGCGCTTTTGAACGACAGCAGTAGATTATTGGTGAATGTTACCGAACCACCTCGATTGTTAGTTAATGAGAATCCTCGATTGTTGGCTGGGGATAATAGACTGATAAGCAACGATAATGCGAGGTTGTTGACCAGCGTTAACGATAATGGGCGGCTTTTAGCGAACGATAATAGGATGTTGAGTAACGAAAATGCTAGACATTTAGCGGTATTGGAAGGTACTAGGATATTGACTGATAAATATTTAGCCAATTATGATCCTTATCACAGAGGAcacttataa
Protein Sequence: MEVIKSESSAFDINKICRSCLSEKGEMRSVFLTDDSTGQPVVLAEMLMGFTNVQVETGDGLPGLVCLECVHNICSAFSFKQLCEQSDANLRQYLGKPLLQKMCKEEEANQQNDMNSSLFLDGFGFYSSSGDSDDDDDYKEDFPLLQAIPNNANDEKAIAQRQLMKAAKIQKGKMSKKKLLAKAGNKAAALAVKKMKRNTNQCAVCKKQFINLKSFRKHLRTHIEDRPYKCKLCPRSFTEENYLNNHMRTHVPEEQKPHECAVCKKRFIHETLLNKHMLKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPGLLKHICDYCKTEFPDSQSLSVHIKQHTGDRPFLCNMCGKCFPQRFNLELHLRTHTGERPFQCEVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECSECHKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYNNQEQQQQQQQQQQQHQQQQHQQQQQQRILPKFHTNDPKFQTQIPVPQQQDHTRLMQQDARMMQQEPRMMQPDNTRMLSNDGSRIISDNSHLLTDARALLNDSSRLLVNVTEPPRLLVNENPRLLAGDNRLISNDNARLLTSVNDNGRLLANDNRMLSNENARHLAVLEGTRILTDKYLANYDPYHRGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -