Dhel029130.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053336.1:8558184-8564255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0006 0.081 14.4 0.2 2 23 169 190 168 190 0.96 2 16 9.1e-05 0.012 17.0 5.9 1 23 195 217 195 217 0.95 3 16 0.00011 0.014 16.8 5.0 1 23 223 245 223 245 0.97 4 16 0.0094 1.3 10.6 2.2 1 20 251 270 251 272 0.94 5 16 1.4e-05 0.0019 19.5 0.4 1 23 279 301 279 301 0.96 6 16 0.0081 1.1 10.8 0.3 1 23 488 511 488 511 0.95 7 16 0.0017 0.23 12.9 6.6 1 23 517 539 517 539 0.96 8 16 1.7e-06 0.00023 22.4 3.9 1 23 545 567 545 567 0.97 9 16 0.00018 0.024 16.0 0.5 2 23 574 596 573 596 0.93 10 16 0.0013 0.17 13.4 0.3 1 23 609 631 609 631 0.94 11 16 0.00026 0.034 15.6 5.9 1 23 637 659 637 659 0.98 12 16 1.8e-06 0.00024 22.4 0.5 1 23 666 688 666 688 0.96 13 16 3.9e-05 0.0053 18.1 1.3 1 23 694 716 694 716 0.98 14 16 3.3e-07 4.5e-05 24.6 0.9 3 23 724 744 722 744 0.96 15 16 2.2e-05 0.003 18.9 0.2 1 23 750 772 750 772 0.99 16 16 0.17 23 6.6 0.6 1 23 777 800 777 800 0.97
Sequence Information
- Coding Sequence
- ATGGACGGAATAATGTGCGATTTTAATCGAATTTGTCGCACGTGCAAGTGCGTATCGCTGGATATGCGTTCGATTTTTGAAACGATGCAAAATATCGGAGACAAAACCCGAATTCACGAGATGCTAATGGCTTGCACTTCTGTACAGGTGAGTGCAGATGACGGATTACCCAATTTGATATGCTCATCGTGCTTGGACCAACTCAGGTCCTCCtaccatttcaaaaaacaatgcGAATTCGTAGACAGCAGCTTGCGCGAAAGCGCAAAAAACGCAAAAGTCAacgaaataaaagaagaattaCAGAACAACGACCTTGGTAGGTATCAATTCACCCCACACTTTCAAAATAACGCACCATTTAAAGATATTGTAGAAACTATCCTAGACGATGGCACCCCTAAAGAAAACGACACCAGTATCCAAAATGTTCCAACTGTTCCTCGCCTGTTTAACGAATCCAAAGACTTCCTGGAACTCTTGGAACACAATCAAATGCTTTTGACCTGCGGCGAgtgtttaaaagtttttacaaCCTTGGATGGTCTCAGGGGGCATAAAAGGTTGCACACTGGGGCGTTATTCCGTTGTAAATTTTGCGACAAAGAATACACGAGGCAAAGTCATTTGCACCGTCATGAACTGGGGCACAATCGGAAAAAAGTGCACGTTTGTAGGATATGCAATAAAACTTTAACTCGATTGGAGCACCTGAAGAGACATTTGACCACGCATTTGAAGGAGAAGCCGTTCAGTTGCTTTAAATGTAAAAGGGGATTTAATAGGGAGGAACATTTACACATTCATGTTGGTAAATGTAAAGGGGATAGAACACATATATGTGAAAtttgtaataaaggttttatcAGGGCGGATAGCTTAGAGGTTCATCGAAAATTGCATGATACTTCGAATTACGTTTTACCGACTTTGGATAATTTAGATAATATAGAACTGCACTATTACGAGATAGATTTCGACGGGGATACCGCGTTTTCTGATAACTCTGATGATATTGAAGATTTATGTGTGGAACCTCAAGTTGAAGTCACAGAAAATAATCAGGAGGATAATCCGCTGGAAGGTGTTCCAGCGGATGATGAGCCAACGGTATCCCCAAAAGCTgaagataaagaggaagagaaatcaAACGGTGATGATGTAGAAACCAAAGAAGGAATCCTGGATGTTGTTGATGAAACAAAGACGTTGGAAGAGGAAGAACATTGCAATGAAGCTGATGTTGATAATTTCGATGCTGATGACGCTAAGGATGATTCTGACAGCGTCCAATCGGAGTATTTACCTCAGAAACCcgttaaaattaaaagaggACGCGGTCGACCTAGGAAAGTTCCGCAAATTTCCAAACTTCCGAAGCGGCCTAGGGGGCGCCCGCCCACCAAACATCTTAAAAAACGCCAGGTgcaggaagaagaggaagaagaagcaaTAGGAGAGTTTAAATGTCCGTCATGCGCccgaattttcacaaaaatgagtCTCATGGAAAAACATGCTATTAGGGAACATAATGGGcttaaagtCCATAAATGTATAAAGTGCAAGAAGGAATTCAGTCGAGGGAATCACCTTAAGCGACACATGCTGACCCATTCTGAAGATAAGCCGCATGTGTGCGAAATATGCACCAAGCCATTTAATCGGAAAGATCACCTAACCCAACACATGAAATTGCACGAGAAGCAAGTAGAATTAGTCTGTGATATTTGCCTTAAACCGTTTAACAGAGCGGATCATCTTGCAAAGCATAAAGCTTCCAGGCATAGCATTGGGGAAAAATTACCTCCCGGGGAAAAGAAGTACAATtgtgaaatttgcggaaaagGTTTCACCACAGAAAAATATAGAGACGTACACGTCAAAGGCCACCTAGGGGTCAAACGTTTCCAATGTAAAACCTGCGATAAGTTCTTTTTATCAAAGTCCCATCTCACCGAACACATGAAGTTTCATAATGAgaattctaaaaagtttttatgCTCGGAATGTGGACAAAGATTCATCAGGAACGATTACTTGGTAATTCATATGAGGCGCCATCGCGGAGAGAAACCGTTCAAGTGCAGATTCTGTGGAAAAGGTTTTCCAAGAACCACGGATCTTACAGTCCATGAACGTTACCATACTGGAGAGAAGACTCACTTGTGTACAATCTGCGGAAGGGGATTCGGACGAGCTTACAACTTAACTGTACACATGCGTACCCACACGGGGGAGAAGCCCTACCGCTGTACATATTGTGACGCAGCTTTCGCCCAAGGCAACGATTTGAAAGCACATGTAAGGCGGCACACTGGCGAAAGATTCCAATGTGAGCTTTGCTCCGAAAACTTCCTCATGGGCTATCTTCTAACTCAACACAAACGCACCGTTCatgGTTTAAACGTCGTGAGCAATATTAGGCGGTTGCAaccactaaacaaaatgaatCCTGACAATCCCGATGAGCCTCCGCCGATTACTATTCCATTGCCGAAACCTGTCATTCCTGATTGCATATTTCAGGTGCAAATAGCCGCGGCTCAGTTACACCACATGGCTCAGAATCCACTTCAGAATCCGCTTgaataa
- Protein Sequence
- MDGIMCDFNRICRTCKCVSLDMRSIFETMQNIGDKTRIHEMLMACTSVQVSADDGLPNLICSSCLDQLRSSYHFKKQCEFVDSSLRESAKNAKVNEIKEELQNNDLGRYQFTPHFQNNAPFKDIVETILDDGTPKENDTSIQNVPTVPRLFNESKDFLELLEHNQMLLTCGECLKVFTTLDGLRGHKRLHTGALFRCKFCDKEYTRQSHLHRHELGHNRKKVHVCRICNKTLTRLEHLKRHLTTHLKEKPFSCFKCKRGFNREEHLHIHVGKCKGDRTHICEICNKGFIRADSLEVHRKLHDTSNYVLPTLDNLDNIELHYYEIDFDGDTAFSDNSDDIEDLCVEPQVEVTENNQEDNPLEGVPADDEPTVSPKAEDKEEEKSNGDDVETKEGILDVVDETKTLEEEEHCNEADVDNFDADDAKDDSDSVQSEYLPQKPVKIKRGRGRPRKVPQISKLPKRPRGRPPTKHLKKRQVQEEEEEEAIGEFKCPSCARIFTKMSLMEKHAIREHNGLKVHKCIKCKKEFSRGNHLKRHMLTHSEDKPHVCEICTKPFNRKDHLTQHMKLHEKQVELVCDICLKPFNRADHLAKHKASRHSIGEKLPPGEKKYNCEICGKGFTTEKYRDVHVKGHLGVKRFQCKTCDKFFLSKSHLTEHMKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCRFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSENFLMGYLLTQHKRTVHGLNVVSNIRRLQPLNKMNPDNPDEPPPITIPLPKPVIPDCIFQVQIAAAQLHHMAQNPLQNPLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -