Basic Information

Insect: Dastarcus helophoroides
Gene Symbol: -
Assembly: GCA_028583605.1
Location: CM053336.1:18707062-18710680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00026 0.035 15.5 2.3 1 23 269 291 269 291 0.97

2 12 2.7e-06 0.00036 21.8 3.6 1 23 297 319 297 319 0.97

3 12 4.8e-08 6.5e-06 27.3 1.9 3 23 327 347 325 347 0.96

4 12 2.7e-06 0.00037 21.8 0.4 1 23 353 375 353 375 0.98

5 12 7e-06 0.00094 20.5 0.6 1 23 381 403 381 403 0.98

6 12 0.00031 0.041 15.3 1.3 1 23 409 431 409 431 0.97

7 12 5.5e-08 7.4e-06 27.1 0.8 1 23 437 459 437 459 0.97

8 12 1.5e-06 0.0002 22.6 0.2 1 23 465 487 465 487 0.98

9 12 1.1e-06 0.00015 23.0 3.2 1 23 493 515 493 515 0.99

10 12 4.6e-07 6.2e-05 24.2 0.4 1 23 521 543 521 543 0.99

11 12 4.5e-07 6.1e-05 24.2 0.7 1 23 549 571 549 571 0.98

12 12 4.6e-06 0.00062 21.0 1.8 1 23 577 599 577 599 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00026	0.035	15.5	2.3	1	23	269	291	269	291	0.97
2	12	2.7e-06	0.00036	21.8	3.6	1	23	297	319	297	319	0.97
3	12	4.8e-08	6.5e-06	27.3	1.9	3	23	327	347	325	347	0.96
4	12	2.7e-06	0.00037	21.8	0.4	1	23	353	375	353	375	0.98
5	12	7e-06	0.00094	20.5	0.6	1	23	381	403	381	403	0.98
6	12	0.00031	0.041	15.3	1.3	1	23	409	431	409	431	0.97
7	12	5.5e-08	7.4e-06	27.1	0.8	1	23	437	459	437	459	0.97
8	12	1.5e-06	0.0002	22.6	0.2	1	23	465	487	465	487	0.98
9	12	1.1e-06	0.00015	23.0	3.2	1	23	493	515	493	515	0.99
10	12	4.6e-07	6.2e-05	24.2	0.4	1	23	521	543	521	543	0.99
11	12	4.5e-07	6.1e-05	24.2	0.7	1	23	549	571	549	571	0.98
12	12	4.6e-06	0.00062	21.0	1.8	1	23	577	599	577	599	0.99

Sequence Information

Coding Sequence: ATGACCTACGAAACGATTCATATTGATAAAATTTGTCGCACATGTCTTTCAACTGAAGGCGGTATGAGGTCCATTTTCAGTATAGACGAAACCGCTGGAGAAACAATCAGATTGTATGAAATGTTAATGTCTTGCACTTCTGTTCAGGTTATGGAAAATGACGGTTTGCCCACTCAGGTTTGTTTCCAATGTATATATTATTTAACAAGGGCTTTCTCCTTTAAACAACTGTGTGAACGTTCAGATGAGACGTTGAGGCAATTCCTAGGGAAGCCTCTGCCTCAGACTTTCCTCGAATTGAAACCATTATTGGCATCAGATGCTATTACTGAAGTACAAGTTTCGGAAGTTATAACAACAGTGACGAGCTCTTTGCAAGTTGTTACAAACATTGGAGATGATATCGCTGACATCCCTGCTGCGGGACTGCATAATTTGTCGGATGACTCTAAGGTTTCCGATCGGTTAGCAATAGATAATATTCCATTGGAAGGTGCTTTAGTAATTGATACGTGTTCAGGGGACACTAAATATGATTGTGATGATGAATGTTTGAATGATACAGCAAACAGTAATGAACTCTTGGatgataaatcaaattttgaaattggtgCTTCTGAAATGAAAGACGATACAAAACAGCTAGACGATAAATCAGATTTTAATATGGATATTTCCGAAATAAAAGaaaattcggtAACAAATAATACCATTGAGGCCGCAACCCAAGCTCCGGACAATGGCGCTGTGtggaaaaaagagttgaaaaaacGCATAATGAAGGACGATACAGAACAACCAATATTTCCTTGTGAACAATGCACATCATGCTTCACAACTTCGGCAGACTTAAAGAACcattcaaaaattcatcttaaaCAAACAAGACACATATGTAAAATCTGCAACCAGGGTTTCTCCAGTGCGAGCACATTGTGTCGCCACATGAAGGTGCACGACGGCGCCAAGCGACATTTGTGCAGCGAATGCGGCAAAGGTTTCTCCAGATCGGACGACCTAACAAGACACCTCAGGACTCACACTGGCGAGAAACCGTTTCCATGCAAACTATGCGGCAAATCCTTCGCCCAATCATTCAGACTGTTGGAACACATGCGGGCCCATGCCAacgagaaaaattttgtttgttcttcGTGCGGTAAAGCTTTCTCGCGGTATACGAGTTTGGCGGCGCACAACAAAACGCATAGCGGCGTCAAAAGCCACGTGTGCAGCCTTTGCGGCAAACGGCTATGTGGTTCAGGATCTCTAGCAATGCACATGAAAATCCATACGGGTCTTAAAGATCACATTTGCCCTTTTTGTGGTAAAGGCTTCACAACCCCAAGTAATTTAATTATACATAAAAGAACTCATACAGGTGAAAGGCCTTATGTTTGCAAAACTTGTGGAAAAGCTTTCCCTGATCCCTCACGGTTGACAGTCCATTCGAGATCGCATAGCGGAATAAAACCTTACGTTTGTCATATTTGCAACAGAGGCTGTGTTAGTTCTTCCCAGTTAAAAAAGCACATAAGGATTCACACTGGAGAGAAACCTTTTAGGTGTACATCGTGCCCTAAAGCGTTCCCGAGGagcgaagatttaaaaattcacaTTAAAACACATACAGGTGACAGAAATCATGTATGTCCAATATGTAAAAAAGGTTTTTATCAAGCTTCTACTTTGAAAGTCCATTTACGAATACATACAGGTGAAAAACCTTACAGTTGCAATGTTTGTCATAAAGCATTTTCGCAAACTGGTCCTCTGTCGACACACATGAAAACTCACGATTGA
Protein Sequence: MTYETIHIDKICRTCLSTEGGMRSIFSIDETAGETIRLYEMLMSCTSVQVMENDGLPTQVCFQCIYYLTRAFSFKQLCERSDETLRQFLGKPLPQTFLELKPLLASDAITEVQVSEVITTVTSSLQVVTNIGDDIADIPAAGLHNLSDDSKVSDRLAIDNIPLEGALVIDTCSGDTKYDCDDECLNDTANSNELLDDKSNFEIGASEMKDDTKQLDDKSDFNMDISEIKENSVTNNTIEAATQAPDNGAVWKKELKKRIMKDDTEQPIFPCEQCTSCFTTSADLKNHSKIHLKQTRHICKICNQGFSSASTLCRHMKVHDGAKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFPCKLCGKSFAQSFRLLEHMRAHANEKNFVCSSCGKAFSRYTSLAAHNKTHSGVKSHVCSLCGKRLCGSGSLAMHMKIHTGLKDHICPFCGKGFTTPSNLIIHKRTHTGERPYVCKTCGKAFPDPSRLTVHSRSHSGIKPYVCHICNRGCVSSSQLKKHIRIHTGEKPFRCTSCPKAFPRSEDLKIHIKTHTGDRNHVCPICKKGFYQASTLKVHLRIHTGEKPYSCNVCHKAFSQTGPLSTHMKTHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -