Dhel018501.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053331.1:13784059-13803778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.3 3.1e+02 3.1 2.5 3 23 87 107 86 107 0.94 2 22 9.7e-06 0.0013 20.0 0.2 1 23 112 134 112 134 0.96 3 22 5.2e-05 0.007 17.7 0.2 1 23 140 162 140 162 0.99 4 22 0.047 6.4 8.4 3.8 1 23 169 192 169 192 0.89 5 22 1.6e-07 2.1e-05 25.7 0.1 1 23 197 219 197 219 0.98 6 22 0.0036 0.49 11.9 1.5 2 23 226 248 225 248 0.95 7 22 1.4e-05 0.0019 19.5 0.8 3 23 256 276 254 276 0.97 8 22 3.1e-08 4.1e-06 27.9 1.5 1 23 282 304 282 304 0.99 9 22 1.2e-06 0.00017 22.8 3.2 1 23 310 333 310 333 0.97 10 22 0.00022 0.029 15.8 0.6 3 23 442 462 441 462 0.97 11 22 0.18 24 6.6 0.6 1 14 467 480 467 481 0.87 12 22 0.00022 0.029 15.8 1.0 1 23 495 517 495 517 0.98 13 22 0.0027 0.36 12.4 0.6 2 20 524 542 523 546 0.89 14 22 9.6e-06 0.0013 20.0 2.4 1 23 566 588 566 588 0.97 15 22 6.6e-06 0.00089 20.6 0.4 2 23 595 616 594 616 0.97 16 22 0.02 2.6 9.6 1.8 1 23 623 646 623 646 0.89 17 22 1.6e-07 2.2e-05 25.6 0.9 1 23 651 673 651 673 0.97 18 22 0.0093 1.3 10.6 0.3 2 23 680 702 679 702 0.95 19 22 2.7e-05 0.0037 18.6 0.3 3 23 710 730 708 730 0.97 20 22 3.8e-06 0.00051 21.3 0.4 1 23 736 758 736 758 0.98 21 22 1.9e-06 0.00026 22.2 6.3 1 23 764 787 764 787 0.98 22 22 0.0014 0.19 13.2 2.4 1 23 793 815 793 815 0.97
Sequence Information
- Coding Sequence
- ATGCAGAGTCCCAGGAACCTGCCTTCTTCGAAACCGTTACGGTTGATCTTGATCAATGTCTTGATGTGGGAAATGGTCGTGGTGCTTCTTCCTAATACTTTTCTCATTCTACAACCATCTTCTTCACCTACTAGTGTACCTCGTTACATATTGGTAACAGAACCTGGATCAAAAGTGAGTTTACCTGCTGAACCTCTTGTGTCTTTGAAATTGTTACCAAAACTTGAAGAACCTTCTTCTGGATTTAAGCCGAGACCTTGCCGAACGTGCGGTGAACTGTGTTTTTCACGTTCTGATCAAAGAGCACATAAAAAATTGCACAAAGGAAAGGAATATCTATGCCCCATTTGCGGTAAAGCGTTCGTATATCTGCACGAGCTCAATGTTCACAAGGCTACCCATGATCAGGAAAGGAagtttaaatgtgaaatttgcgGAGTAGCAGTTAAAGCAAGGAGCACTTTAATAACGCACATGAAAAGGCATGATGAAAATGAGTATAAATTTCCTTGCACTGAATGCGATAAGAAATTTGTTAGTGAATGGTATTGTCAAAAACACATAGATGACTGTCATAGCAAAGTGCGTTACGTATGTGATTTATGTGGTAAATCTTTCGGGAATCAGGGTAATCTAAAGGGGCATATGAAGATACATTTTCGAACTACAAAGTCCACATGCGACAAGTGTGGCAAGGAGCTGGCCAACGAGGTGTGTCTTAGACATCATATTGCTCGAATCCACGACAAATCAACTCTTCAAATATGTAATATTTGTGGCAAAGCTATTTCAACTACGCATAGTCTTAATGTCCATATGCGTAGTCATACAGGCGAAAAACCTTATAAGTGCAATATCTGTGGCAAAGCGTTTACCAAAAAGCCGAATTTGAGGATGCATACCAGAACGCATACCAAAGAACGACCTTACAAGTGCAAAGAGTGTGAAAAGTGTTTTACTCAAAGAGGAACTTTAACTTTACACATTCGACAAGTTCACACCGGAGACTTGCGATACGAGGCAGGGAATACTACTTCGACTTCGGGGTTTATACTGAACTCTTCTGAATTTGAACAACTCCCTTGTTATCAGTTAGATATTAAATCTAACTCGATTCAAGTAGATTACACTGAAAACTCAATTTTCCTACAACAAACAGCAATCGAGCGGCTTTCGCCTATAAAATGTGAAATCGAGATAAATGAGGATTCAAATCaattacttttaattaaaaacgagCCCGATGAAGATTCGGTGAAAGATTCATCTGCAGAAATCTCCAAATCAAGTCGTGGGCGATCCGATGGATTTGTTCAAAGAAATTGCGAGGTGTGTGGCGAATGCATCATATCTAACGACGATCTCAAGCGCCACCAGATAAGACACGTTGTAAAGGAATTCGTGTGTCCTACTTGTGGTAAAGtgcttaaatttaaatatcaatccATAATTGATGCACATGTTGCTTCccattcaagaaattttaaatgcgaACTTTGTGAAGCTTTATTTAAATCTGAATACAGTCTGCAAAGGCACACGAAAATACACACAGGTGATAATCAAATTAAATGCACTATGTGCGATCAAAGATTTGCCTCAAATTGCTACTTGATAACACACGTGGGTGCTGAACACATTCTTTTACATGCAGATGAAAGAGCACGTAAAAAAACTTGcgatgaaaaaaagaaatttatatgCCCGTTTTGCGGCAAAACGTTTGCCTACCAGCATAATTTTAATGTTCACAAGCTTAGCCACAATCAGGAAAAGGAgcttaaatgtgaaatttgtgGAGTAACAGTTAAAACAAAAAGTACTTTGATAATGCACATGAAACGGCATGATCAAAGTGAATATAAATTTGCTTGCACTGAATGCGACAAGAAATTTGTTAGTGAATGGTATTGTCAGAAACACATAGATGACTATCATAGCAATGTGTGTCATGTATGCGATTTATGTGATAAATCTTTCGAGAATCAAGCTAATCTAAAGGAGCATATGAAAATACATCTTCGAACTAAAAAGTCCACATGCGACACATGTGGCAAAGAGCTGGCTAACGAGACGGTTCTTAGACATCATATTGCTCGAGTTCACGATgaatcaacttttcaaatatgtAACATTTGTGGCAAAGCTATTTCAACTACGTATAGTTTTAATGTTCACATGCGCAGTCATACAGGCGAAAAACCTTATAAGTGCAATATCTGTGGAAAAGCGTTTATCAAAGAGCTTAATTTGAGGATGCATACCAGAGCACATACCAAGGAACGACCTCACAAGTGCAAAGAATGTGAAAAGTGTTTTACTCAAAAAAGTACTCTAAATTTACATATTCGAAAAGTTCACACCGGAGACCTGCGATACGAATGCGTcgtttgtcacaaaaaatttgttactttGACTCTGTTATCAACGCATTCAAAGAACCATGAAGATTTATCGAAAAAATGA
- Protein Sequence
- MQSPRNLPSSKPLRLILINVLMWEMVVVLLPNTFLILQPSSSPTSVPRYILVTEPGSKVSLPAEPLVSLKLLPKLEEPSSGFKPRPCRTCGELCFSRSDQRAHKKLHKGKEYLCPICGKAFVYLHELNVHKATHDQERKFKCEICGVAVKARSTLITHMKRHDENEYKFPCTECDKKFVSEWYCQKHIDDCHSKVRYVCDLCGKSFGNQGNLKGHMKIHFRTTKSTCDKCGKELANEVCLRHHIARIHDKSTLQICNICGKAISTTHSLNVHMRSHTGEKPYKCNICGKAFTKKPNLRMHTRTHTKERPYKCKECEKCFTQRGTLTLHIRQVHTGDLRYEAGNTTSTSGFILNSSEFEQLPCYQLDIKSNSIQVDYTENSIFLQQTAIERLSPIKCEIEINEDSNQLLLIKNEPDEDSVKDSSAEISKSSRGRSDGFVQRNCEVCGECIISNDDLKRHQIRHVVKEFVCPTCGKVLKFKYQSIIDAHVASHSRNFKCELCEALFKSEYSLQRHTKIHTGDNQIKCTMCDQRFASNCYLITHVGAEHILLHADERARKKTCDEKKKFICPFCGKTFAYQHNFNVHKLSHNQEKELKCEICGVTVKTKSTLIMHMKRHDQSEYKFACTECDKKFVSEWYCQKHIDDYHSNVCHVCDLCDKSFENQANLKEHMKIHLRTKKSTCDTCGKELANETVLRHHIARVHDESTFQICNICGKAISTTYSFNVHMRSHTGEKPYKCNICGKAFIKELNLRMHTRAHTKERPHKCKECEKCFTQKSTLNLHIRKVHTGDLRYECVVCHKKFVTLTLLSTHSKNHEDLSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -