Dhel002009.1
Basic Information
- Insect
- Dastarcus helophoroides
- Gene Symbol
- -
- Assembly
- GCA_028583605.1
- Location
- CM053325.1:31065908-31076935[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-11 1.7e-08 35.0 0.0 1 39 274 313 274 317 0.90 2 4 9.8e-12 2.2e-09 37.8 0.1 1 39 328 366 328 369 0.95 3 4 3.3e-18 7.4e-16 58.6 0.0 1 45 383 428 383 428 0.98 4 4 1.2e-16 2.8e-14 53.5 0.0 1 39 435 474 435 478 0.93
Sequence Information
- Coding Sequence
- ATGTGCAAGTCACTGCTCAAAACAGCGGACCAACTGAAGATCAAAGGGCTGTGCGAATCGccggaagaaaaggaaaatacAGCTCCCATATCGTTCCCGTTTGTATCAAGAAAACTTCGGAAATCTTCGTCTCCGAGTCACATAGAGGGTGGTAAGCGGGTGCGAACGAAACGACCGCGCAGAGACAGCACAGAGAACAAAGAAGATCAAAAAGGTGGCGAGGATAACCAAACGGACGAAGAAGAAAATGTCATGCCTGTAGCTTTAGATGATATCAAGAAAAATAGGGAAGATCCCGAAAATCCTAGCCCTTTAGACATGAGCAGTCATGGAGCCATCAGTGGACAgCCGACTATGTTCTCCCAGTTTGGCGTGGATTCTGAAGACTTCCCCCCGGAACCTCCGGCTCCATCTGCCATACCGGTAGGCCATGTAGATATGCAAGACCATTCCCCCACCAGAACGCTTCTCACCAACAGTGGATCTGTACAACGGACTGACTTATCGGAATCTAGCATTAAATATagcgaaattaaaaaggaaGTGGTCGATATCAAATTCGAAACGTTGCGGTCGTACGATCAGGATTCGCTTTTAGAAATGGATAGTCGAATGTCCGGCGGTCCCGACCATTCTATGGATAGTCACGAGGATCACGAACATATGCAATCTATGATGATCACCCCTGAACTTATGGGAATGGTGCCTGGAGTTTCTAATAGGTTAGATTTAAATGGTAGTGGTGACTATTCTTTCGGCAAAAACGGTCACTCCGAGCATGGCGCAACGAGATCTCACGGTGGCGGCCCCAAGACGTGGACGCAGGAAGATATGGATATGGCTTTAGACGCTTTAAGAAATCACAACATGAGTCTGACAAAGGCATCTGCAACCTACGGCATACCATCGACGACTCTCTGGCAGAGGGCGCACAGATTAGGAATCGATACACCAAAGAAAGAAGGACCGACGAAATCATGGACtgaagaaagtttaaataacgCTTTAGATGCCTTAAGAACGGGAAGTATCTCAGCCAATAAAGCCAGCAAAGCTTTTGGTATTCCGAGTAGTACATTGTACAAAATAGCCAGGAGGGAGGGGATAAGATTAGCGGCGCCATTTAACGCCGCGCCCACCACTTGGACGCCCGAAGATCTGGAAAAAGCCTTAGAATCCATCAGATCTGGTCAGACTTCAGTGCAAAAAGCGTCAACGGAATTCGGCATACCGACTGGGACGCTGTATGGCAGGTGTAAGAGGGAGGGTATAGAACTGTCGAGGTCTAATCCGACCCCATGGTCGGAAGATGCGATGGGGGAAGCTCTAGAAGCAGTGAGGTTGGGCCAGATGTCTATAAATCAAGCAGCAATTCACTACAATTTGCCTTATTCTTCATTGTACGGTCGCTTCAAGAGAGGAATCAAATATGAAGACGGGATGGAAGTCAACTCGGACAGTCAATCTCATTTAGACGCCCAAGCATTCGGAATGGAATACGCCCAACAACAGCAAATCCAGTACCAGAACCAGACGAACAGCTGA
- Protein Sequence
- MCKSLLKTADQLKIKGLCESPEEKENTAPISFPFVSRKLRKSSSPSHIEGGKRVRTKRPRRDSTENKEDQKGGEDNQTDEEENVMPVALDDIKKNREDPENPSPLDMSSHGAISGQPTMFSQFGVDSEDFPPEPPAPSAIPVGHVDMQDHSPTRTLLTNSGSVQRTDLSESSIKYSEIKKEVVDIKFETLRSYDQDSLLEMDSRMSGGPDHSMDSHEDHEHMQSMMITPELMGMVPGVSNRLDLNGSGDYSFGKNGHSEHGATRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNNALDALRTGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRGIKYEDGMEVNSDSQSHLDAQAFGMEYAQQQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -