Dcer009178.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- topi
- Assembly
- GCA_949768715.1
- Location
- OX458318.1:399712-402321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2e-05 0.0013 20.2 1.1 1 23 350 372 350 372 0.98 2 7 2.2e-05 0.0015 20.0 0.2 1 23 378 401 378 401 0.97 3 7 0.00016 0.01 17.3 0.3 3 23 409 429 407 429 0.98 4 7 1.6e-06 0.00011 23.6 0.8 1 23 435 457 435 457 0.98 5 7 0.00072 0.047 15.2 0.6 1 23 463 485 463 485 0.97 6 7 2.5e-06 0.00017 23.0 1.8 1 23 491 513 491 513 0.98 7 7 6.4e-05 0.0042 18.5 1.5 1 23 519 542 519 542 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAACTTTCGACACATGAACAAATAATGGACACTCAAGAACCGGGGTTGGAGTTGTCCCAAACTGAGATAATCAGCATAGACATACTGTGTCGATTATGCGCCAATCACAACGAAAGAGTCATTGGCATTTACAGCGAGGAAGGAATATCAAACGATTTAGCAAATAAGATGAATTTGTATCTACCGATTAAAGTGTCTGAACACGATTCATTACCGCTCCATTGTTGTTGGAGCTGCGCTTCCACCGTCCTGGCATGGCACGAATTAGTCGTCGCCAGTGTTGAGGCCGATCGCCGATTGAGAGGGCTGGTAGAGAAGGGCGTCAATGACATCTATGAAAGTCCCATTTCTCTATCCAGGAATGAAATGGAGTCGACCGATGCAAGTCTGACTGTTTTCTGCCAAGACGCCGTTAAATTCGAAACTTCCGATCAGTATCTAAAACACAGTTCGAGAAAGAAGACAGACGAAAGCGAAGAAAAAGGAAACTGGATCAAATCGGAAGACATCCTCGACGACTCGCTGTCCAACTACATTCAGAACATCCAAAATCCGTACATTACGGACTGCGATGCGGACCAGAACAACGAAGTGGAATGCTTGGAAACGCAAAAAAGCGACGACGAAGTTTCGGTGGAGGAACGACGCCCCAAGAAGCCCAAAGCAAAACGAAAATCGTTGAGGAAAGGTTCGGCCAAAAAGAATTCTCCGCACAATTTGCAAGCCATAAAGGAAGAGGAAATAAAGACTGAAGATAAAGGCGAATTGGATAGCTCGGATGATGATAGGGTTCTTTCCGAATGGATCACCCGACAGGATGATAAGACCGACATGTACAATTACGTTTGCCAGTGTTGTTCGTCCGTTTACTTGCAAGAAGAGGACATAATCAATCACATAAAACAGGACCATCCGGATAAGGTCGACATGTTGTCGTCGGTTCCTGCCTCGGAGTTGAGCAAGAAGGAGCGCCGCAAGAATACGAAGATAGATCAAGATGCGGTCAATGCGGCGAAAGTTGTCGTCGAAGGCCGCATTTACTACAACTGTAAGATTTGCGGCAAGAGTTTGCATTCCCCCTACACTTACATTTGGCACATGAGGATACACACGGGGGAACGTCCTTACGTGTGTGATCTGTGCGGTAAGCAATTTCGCGTTTCTCAAGGCTTAGTGCGACACCTGCGCGAGACTCACGAAGGCATAAAAAATTTCGGATGTGATTTATGCGGGAGGATGTTTGCGACACGACGAAACGTCGAGGAGCACAGAAGGATCCATACTAATGAACGTCCGTACATTTGTGATTTATGCGGCAAATCCTTCAAGCAAAAGGCCTCGTTGTTCGTGCACAACAGGTCGCATACAGATCTGTTTCCATTTAGGTGTAGTTATTGCAATCAGGGTTTTCGCACGAGGCCACCCTTAATGATTCATGTCACAAGACACACCGGAGAGAAGCCCTATCCTTGTGATATTTGCGGTAGGTGCTTCAGGATCAAATACGAACTTAAAAGGCACAGACTGATACATTCAGACGAGAAGCCGTTTTCTTGCGTCGAATGTGGACTTAGCTTCAGGCAAAAACGGTACTTGAGAAATCACAATAAAATCAATCATAACCGTGCCACCCCGTAA
- Protein Sequence
- MEELSTHEQIMDTQEPGLELSQTEIISIDILCRLCANHNERVIGIYSEEGISNDLANKMNLYLPIKVSEHDSLPLHCCWSCASTVLAWHELVVASVEADRRLRGLVEKGVNDIYESPISLSRNEMESTDASLTVFCQDAVKFETSDQYLKHSSRKKTDESEEKGNWIKSEDILDDSLSNYIQNIQNPYITDCDADQNNEVECLETQKSDDEVSVEERRPKKPKAKRKSLRKGSAKKNSPHNLQAIKEEEIKTEDKGELDSSDDDRVLSEWITRQDDKTDMYNYVCQCCSSVYLQEEDIINHIKQDHPDKVDMLSSVPASELSKKERRKNTKIDQDAVNAAKVVVEGRIYYNCKICGKSLHSPYTYIWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHEGIKNFGCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKSFKQKASLFVHNRSHTDLFPFRCSYCNQGFRTRPPLMIHVTRHTGEKPYPCDICGRCFRIKYELKRHRLIHSDEKPFSCVECGLSFRQKRYLRNHNKINHNRATP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -