Dcer008974.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458317.1:35053692-35058419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5 3.3e+02 3.1 0.4 1 23 140 162 140 162 0.93 2 22 6.2 4.1e+02 2.8 3.8 1 23 177 200 177 200 0.89 3 22 0.86 57 5.6 0.2 1 23 209 232 209 232 0.96 4 22 0.3 20 7.0 0.4 2 23 246 268 245 268 0.96 5 22 0.00036 0.024 16.2 3.3 1 23 274 296 274 296 0.94 6 22 1.2 81 5.1 1.0 1 23 321 343 321 343 0.94 7 22 0.0012 0.077 14.6 1.6 1 23 390 413 390 413 0.96 8 22 0.022 1.4 10.6 4.7 1 23 424 447 424 447 0.96 9 22 0.12 8.1 8.2 4.9 1 19 491 509 491 513 0.93 10 22 2.4e-07 1.6e-05 26.2 0.8 1 23 519 541 519 541 0.98 11 22 0.062 4.1 9.2 0.4 1 20 547 566 547 567 0.95 12 22 2.7 1.8e+02 4.0 0.4 1 23 713 735 713 735 0.94 13 22 0.033 2.2 10.0 0.7 1 23 782 805 782 805 0.96 14 22 6e-05 0.004 18.6 5.1 1 23 816 839 816 839 0.97 15 22 4.8 3.2e+02 3.2 0.4 2 23 855 877 854 877 0.90 16 22 0.026 1.7 10.3 2.6 1 19 883 901 883 905 0.93 17 22 1.7e-05 0.0011 20.4 4.7 1 23 911 933 911 933 0.98 18 22 0.0017 0.11 14.1 1.8 1 20 939 958 939 961 0.95 19 22 0.0033 0.22 13.2 7.2 1 23 967 989 967 989 0.98 20 22 0.0035 0.23 13.1 2.5 1 23 995 1017 995 1017 0.98 21 22 5.2e-05 0.0034 18.8 0.6 1 23 1023 1045 1023 1045 0.97 22 22 0.0028 0.18 13.4 4.8 1 23 1051 1074 1051 1074 0.92
Sequence Information
- Coding Sequence
- ATGGACAATCCAAAATTACCAAGATGCCGTACATGTCTTGAACAAGGTTGCAAATTGATACCATTTTCAGTGATGAGCACAGCCAGCAAGAATACGCTCCACATGTCTGATATATTTATGACATGCGCTTCCATacagATTGCACCCAATGATGGGTTTTCGCAATATGCTTGTTCAGATTGTGTTATATCAGCAGAGAAGGCGTACCTTTTTAAGAAACAATGCGAACAGAGCGATAAAGTTTGGAACGAATTTAGTAAACAATTAAAAGAGAAATCAGTACAAGTTACAACTCCAATGaatttatgtgaaattgaTCATGTGACGAATGATGCAGAAATGAGTGAAGcagaatttgttgaaattgatCCAGATATAAAGTCAATTGAAATTTACGAGGAAGTTAAAAACGAACAGTTTACTTGCAGACtttgttttacaatttttcttgACGAAGCAAAACTCTCAAGGCACGAACTTGCTCATACAATCGAACCCAAAGAATTAGCCATAAAAGAACATGCAATTTATCATTGTCGAAAATGTTCTGTTAATTTTGAGACTGCAGAAGACTTCATAGAACATTGCCAAAAATTGCACGACAATTCAACCGAAAAGCCTTGttataattgtaaattatgtGCAGGAGAGTTTGATGATCTTATCGAATTCACGACACATATTTCTAAAACAcatggaaatttaaaatcaaaacaattggCGATTTGGCCGCAATCATGCGCATATTGCCCATTGACATTAAAATCCCGCAATGAAAAAACAGCACATCTCAATCGAGAACACAGCGATTTGAAAACTTTCAGTTGCAGGAAGTGCGGGAAAACGTTCTTTCAGAAGGTCCACTTGAGCAAACATGAAGCATGGCACAAtccaaaatttgttgaagttGATTCAGATATAAAGTCAATTGAAATTCACAACGACATTGGATATGAACAGTTTACTTGCAAACATTGTTTGACAATTTTTCTTGATGAAGCAAAACTTTCAAGGCACGAACTTGCTCATACAATTGAACCTAAAAAATCATTGGTAAAAGAGCTCGTAATTTATGGTTGTCGAGAATGTTCCATTGATGCCAAAACAGCAGAAGACTTTGTAGAACATTGCCATAACTTGCATGagaattcaattaaaaagcCTTACTATCGTTGCAAATTATGTGAAAGAAATTTTGCTAAATTGTCCCAACTCTCAACGCATGTTTCAAAAACACACACACCTCATCGGTCATCTCATGGGTCAAGATTTGAGTGCAAAATATGccaccaaaaatataaaacaattgataCTTTGCATTACCACCAAAAGGCACTAcactcaaaaattaaattattgccATTGTCACAATACACTTGGCCCCGCCCGTGTAATTACTGCGAAGTGTCTTTAAACTCGCACATGGAACGTTTGACACATCACGAACAAGAACACGGCGATTTGAAAAGCTTCAGTTGcaataaatgtggaaaaacatttttacacaAAAAGCTTCTGTTGCAACATGCGCTATGTCATGAAGATGCTAAGAAGTACATGTGTCAGTATTGCGGAAAAGGTTTCAATAAGTCCTACAATTTGACGGTACATATTCGGATCCACACCGGTGAAAGGCCTTACAAATGCGACAAATGCGATGCTACTTTTCTTCAATGGACAGCACTGCACACTCATCGAGTGTGTCATGTGGAAGAAAGAAATTTTGAATTGATGAGCACAGCCAGCAAGAATACGCTTCACATGTCTGATATATTTATGGCATGTGCTTCTATacagATTGCACCCAATGATGGGTTTTCGCAATATGCTTGTTCAGAATGTGTTACATTAGCAGAGAAGGCGTACCTTTTTAAGAAACAATGCGAACAAAGCGATACATTTTGGAATGAATTTAGTAAACGCTTAAAAGAGAAACCAATATCGGACCAAGTTACAACTTCACCAAATGTACCCCAAGAAAACCTGCAGAGAATTGTGAGCATTCAAACTCCTGTTGATGGATGTGAAACTGATGGTGATGTGACGAATGTTGcagaaatcattgaaatagaatttgttgaaattgatTCAGATATAAAGTCAACTGAAATTAACGAAGACATTGAATATGAACAGTTTACTTGCAAACtttgttttgcaatttttcttGATGAAGCAAAACTTTCAAGGCACAAACTTGCTCATACAATCGAACCTAAAAGATCATTGGTAAAAGAGCTCGCAGTTTATGGTTGTCAAGAATGTTCCATTGATACCAAAACGGCAGAAGACTTCATAGAACATTGCCATAACTTGCACAAGAATTCAATTGAAAAGCTTTACTATCGTTGCAAATTATGCGAAGGAGATTTTGCTAAATTGTCCCAACTCTCAACGCACGTTTCAAAAACACACACACCTCATCGGTCATCTTATGTGTCAAGATTTGAGTGCAAAATATGCcaccaaaaatttaaaacaaacgaTACTTTGCGTCATCACCAGCTGGTACTGCACCCCAAACTTAAATTATCGGCATTGTCACAATCGACTTGGCCCCAACCGTGTAATTACTGCGAAGTGTCTTTAAACTCGCACAAGGAACGTTTGGCACATATCGACCAGGAACACGGCGATTTGAAAAGCTTCAGTTGcaataaatgtggaaaaacatttttacacgAAAAGCATCTGTTGCAACATGCGCCAGTTCACGAAGAAGTCAAGAAGTTCATGTGTCAGCATTGCGGAAAAGGATTCAAGATCTGCTCGAATTTGAAGACGCACATTCGGATCCACACCGGTGAAAAGCCTTATAAGTGTGACAAGTGCGATGCAAGTTTTATACAATGGACAACATTGCGTGGTCATCAACTGTGTCATGTGCAAGAAAGAAATTTTGAATGTAAAGAAtgtcacaaaaaatataaatcagcGCATGCGCTGCATGTTCACACGCAAAGACACGCTGTTGGCCCCAAATATTCTTGTCATTTGTGTCCACAACAACTTAAAACTCCTCATGGTTTGAAAATGCACCTTTTAACCCATTCTAATAATCGCTTATTTGTGTGTAAAGTGTGCGAAAAGGAATTCAACGGTAAGTACTACCTGAGGGAACACATGAACGCACATCCGGCGCTCAGGCGGTATATTTGTTCAATTTGTAACAAGGGATTTACTCAGTCGCATTGTTTGCGTTCGCACAATGCTAGATTTCACAAGGATGACACGGTACTTTGA
- Protein Sequence
- MDNPKLPRCRTCLEQGCKLIPFSVMSTASKNTLHMSDIFMTCASIQIAPNDGFSQYACSDCVISAEKAYLFKKQCEQSDKVWNEFSKQLKEKSVQVTTPMNLCEIDHVTNDAEMSEAEFVEIDPDIKSIEIYEEVKNEQFTCRLCFTIFLDEAKLSRHELAHTIEPKELAIKEHAIYHCRKCSVNFETAEDFIEHCQKLHDNSTEKPCYNCKLCAGEFDDLIEFTTHISKTHGNLKSKQLAIWPQSCAYCPLTLKSRNEKTAHLNREHSDLKTFSCRKCGKTFFQKVHLSKHEAWHNPKFVEVDSDIKSIEIHNDIGYEQFTCKHCLTIFLDEAKLSRHELAHTIEPKKSLVKELVIYGCRECSIDAKTAEDFVEHCHNLHENSIKKPYYRCKLCERNFAKLSQLSTHVSKTHTPHRSSHGSRFECKICHQKYKTIDTLHYHQKALHSKIKLLPLSQYTWPRPCNYCEVSLNSHMERLTHHEQEHGDLKSFSCNKCGKTFLHKKLLLQHALCHEDAKKYMCQYCGKGFNKSYNLTVHIRIHTGERPYKCDKCDATFLQWTALHTHRVCHVEERNFELMSTASKNTLHMSDIFMACASIQIAPNDGFSQYACSECVTLAEKAYLFKKQCEQSDTFWNEFSKRLKEKPISDQVTTSPNVPQENLQRIVSIQTPVDGCETDGDVTNVAEIIEIEFVEIDSDIKSTEINEDIEYEQFTCKLCFAIFLDEAKLSRHKLAHTIEPKRSLVKELAVYGCQECSIDTKTAEDFIEHCHNLHKNSIEKLYYRCKLCEGDFAKLSQLSTHVSKTHTPHRSSYVSRFECKICHQKFKTNDTLRHHQLVLHPKLKLSALSQSTWPQPCNYCEVSLNSHKERLAHIDQEHGDLKSFSCNKCGKTFLHEKHLLQHAPVHEEVKKFMCQHCGKGFKICSNLKTHIRIHTGEKPYKCDKCDASFIQWTTLRGHQLCHVQERNFECKECHKKYKSAHALHVHTQRHAVGPKYSCHLCPQQLKTPHGLKMHLLTHSNNRLFVCKVCEKEFNGKYYLREHMNAHPALRRYICSICNKGFTQSHCLRSHNARFHKDDTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -