Dcer003578.2
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- zfh1
- Assembly
- GCA_949768715.1
- Location
- OX458316.1:22635664-22637364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0024 0.16 13.6 0.4 1 23 197 218 197 218 0.97 2 10 0.18 12 7.7 2.9 1 23 260 281 260 281 0.97 3 10 0.00034 0.023 16.3 4.6 1 23 287 309 287 309 0.97 4 10 0.033 2.2 10.0 3.8 1 23 315 337 315 337 0.92 5 10 6.2e-06 0.00041 21.7 3.1 1 23 345 367 345 367 0.96 6 10 0.01 0.67 11.6 8.7 1 19 380 398 380 401 0.92 7 10 5e-06 0.00033 22.0 0.9 1 23 411 434 411 434 0.96 8 10 4.4e-06 0.00029 22.2 0.5 1 23 466 488 466 488 0.98 9 10 1.5e-05 0.001 20.5 0.2 1 23 494 516 494 516 0.98 10 10 0.00014 0.0094 17.5 2.0 1 23 522 544 522 544 0.97
Sequence Information
- Coding Sequence
- atgaatacaGACAGTGTACCATTTATGAATTTAAGTAAAGTATGCCGAATATGTTTAGTCGAAGGTGATGCTATGAGATCTGTATTTAGTAAATTAAGTGAGGCTGAAATTTTAGAAGTGAATGTGTCAAATTTAGCGGAGGTTTTAATAAGAATAACTTCCCTTTCTGTTGAAGAAAATGATGGTTTTCCAGCCTTAATATGTGCAAACtgtgtaaatttaatacataTTGCATACAAATTTAGAGTTCAATTTGATCATTCAACTACAATtttacaacaatatttatcTGAATGTGTAAAACAAGAAAGTCATGGAGATATTTTAgattatttagaaaatgatcaaaattttgattatgaCGGTAATGTAACTGATAATTTTATAGAtacattgaataaattaaaaactgaacaCAATGGCAAACGTCAAACAAGTAGAACACAAATTGAAAAACGTGCCGGTAATAAAAATCCCGACGTTAAGCAACCCAAGAAAAGAGGAAGGAAACCAAAGAATAAAGGCAAGACACACGATAATTCTTATGTTTCAAATATAAGAGATTCGAATGAAGCAAAACCAGTTTATCATCCATGTCCAATTTGTACGAAAGAATTTACGGCGTTGCAATTACGTGAACATGCTCAAACACATAAGgcattgaaaaaatatttaagtatatCTCCAGCGCAAAGACCTTCatctgcaattaaattttattacaaaaaggaTCCAAATAACACAAATATTAGTTTGCATTGCAGGAAggaaaaaatacataaatgtGTAAGTTGTGGACTTGAATGTAGTGCTAGTTATTTGCGTTTACATTTACAAACTCATCGAAATCAAACTGAatataaatgtaatcaatGTGAACgagtgtttaaaaaattaaatcatttaaatactCATCGTGTTAAACATCTAAAAGAGTATCCGTATAAGTGTGAACATTGTGGTAAAGGTTttgtcattaaaaataatttcgattgCCACGTATTAACTCATAACACAAATCAAGAATTACCTCATGAATGCAGCTATTGTTTAAAGCGTTTTTCCAATCCTGAACACCTAAATAGACATATGGTGATACATACTGAAAATGTTAGTTACTCGGTTAAATATAAAGTATGTAAGTGCCATCACTGTTTGAAGACCTTTAAAGATCGTTCAGAATTAAAAACCCACAATTGTGTTCCGATCGAACAGGCAGTTAATACAAGATTTCCTTGTAAAATATGTAACAAAGTATTCAAAAATTCGAGTGGACTGTATAATCATAATCGCAATATACACAAACTTAAAGGGGCTAAAGTTTTGTGTTCAGTTTGTGGTAATTACGTTTCAAACATTTACAATCATATGATGCGCCATACTGGTGAAAGACCTTTCCAATGTAATCAGTGTGGTAAACGATTTATTGGAAAACCACAGTTGCGGCAGCATTTATTGGTTCATTCAGGTTTAAAGCCATTTGTATGCAGTGTGTGTGCTAAAGCATTCaataatttgtacaatttACAAGTTCATGAGAGAATTCACAAAGGAGACAGGTGTCatatttgtaacatttgtaataagggatttttggaaaaatcatATCTCAAGAAGCACATGAATGTTCactcaaaattataa
- Protein Sequence
- MNTDSVPFMNLSKVCRICLVEGDAMRSVFSKLSEAEILEVNVSNLAEVLIRITSLSVEENDGFPALICANCVNLIHIAYKFRVQFDHSTTILQQYLSECVKQESHGDILDYLENDQNFDYDGNVTDNFIDTLNKLKTEHNGKRQTSRTQIEKRAGNKNPDVKQPKKRGRKPKNKGKTHDNSYVSNIRDSNEAKPVYHPCPICTKEFTALQLREHAQTHKALKKYLSISPAQRPSSAIKFYYKKDPNNTNISLHCRKEKIHKCVSCGLECSASYLRLHLQTHRNQTEYKCNQCERVFKKLNHLNTHRVKHLKEYPYKCEHCGKGFVIKNNFDCHVLTHNTNQELPHECSYCLKRFSNPEHLNRHMVIHTENVSYSVKYKVCKCHHCLKTFKDRSELKTHNCVPIEQAVNTRFPCKICNKVFKNSSGLYNHNRNIHKLKGAKVLCSVCGNYVSNIYNHMMRHTGERPFQCNQCGKRFIGKPQLRQHLLVHSGLKPFVCSVCAKAFNNLYNLQVHERIHKGDRCHICNICNKGFLEKSYLKKHMNVHSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -