Dcer020970.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458320.1:21820751-21822856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.2 4.8e+02 2.7 3.8 1 20 209 228 209 230 0.92 2 16 5.4e-05 0.0035 18.8 0.3 1 23 254 276 254 276 0.95 3 16 0.00012 0.0077 17.7 1.7 2 23 283 304 282 304 0.96 4 16 7 4.6e+02 2.7 0.5 2 23 311 334 310 334 0.75 5 16 0.78 51 5.7 3.6 5 23 365 384 355 384 0.86 6 16 0.028 1.8 10.2 0.1 2 23 388 409 388 409 0.97 7 16 0.0074 0.49 12.1 0.7 2 23 412 434 411 434 0.93 8 16 0.0002 0.013 17.0 0.4 1 23 441 463 441 463 0.95 9 16 0.0066 0.43 12.2 2.1 1 23 469 491 469 491 0.98 10 16 2.6e-05 0.0017 19.8 1.3 1 23 497 520 497 520 0.97 11 16 0.0018 0.12 14.0 1.1 2 23 528 549 528 549 0.97 12 16 0.0013 0.088 14.4 2.2 2 23 559 581 558 581 0.94 13 16 5.2e-05 0.0034 18.8 0.5 2 23 585 607 584 607 0.96 14 16 0.0048 0.31 12.7 1.2 1 23 616 638 616 638 0.98 15 16 0.00045 0.03 15.9 3.0 1 23 647 670 647 670 0.95 16 16 5e-05 0.0033 18.9 3.4 1 23 673 696 673 696 0.97
Sequence Information
- Coding Sequence
- ATGCGAAAAAAAGATGATATTGAAGATTACAGCAAACCTGGCGTTTCCGGAATTGGGCGCAAAATTTCTGGGGGTAACACATCGAAAAAATTCGCAAGTTCTGATTCTGAAGACATTGAAACCGAAGAAGGAAATGATTACGAATGCAACACAACTGATCAACAAGAAACCGATTCAGAGGAAGAACCTGAGAATTCTGATGGAAAGCAGGTTCACGGTGCCGTTAGCTCAACAAtggaatttgaaattgaagATTACAACAAACCGGGCGTTTCTGGTATTGGTGGCGACACATCGAAAAAATTATCAAGTTCTGATTCTGAAGACATTGAAACCGAAGACGGAAATGATTACGAGCGCAACACAACTGATCAACAAGAGACCGATTCAGAAGAAGAACCCGAGAAATCTGGTGGAAAGCAGGTTCATGATGACTTTAGCTCAACAATGGAAACGGAATCTGAAATTGAAGCTTACAACAAACCGGGCGTTTCTGGTATTGGTGGCACAATTTCTCGTGGCGGCACATCGAAAAAATTCTCAAGTTCTGATTCAGATGAAGAGAGGGCTAATAAAGTTAGCACACCTGATCAACCAGGAAGCGATTCTGAAGATGAAAATGAGTTTTGTTGTAAAACATGTTACACAATTTGCAAGAACCGCGAGGAGTTTGATGCGCACGTGTCATCCCGCTGCGGCACAATAAAGTATTATCAACTTGTAGACCTTAAAAAACACAGGTTAGAGAAACATCGTATTTACACGTGTAAAAGATGTGGAAAACCTTTTTCCCAAAGGAGTGACTACGATGCACATGGTGCCGTTCACAAAAACGATAATTACTGGACCTGCTACATTTGTGGTAAATACTTTACCTACAAGAACACTTTCAGGCAACACATGGAGCAGCATAAAGGAAAAAAAGGTTTGGTTTGCAAGCtatgtaatttatattttagagAAGATAGTGGTGCTCTTCGTAATCATCTGGCAATTTTCCATCCGAGAATATCTCCAGTGACACTTGAAACGGGTGAAGAGTGCGGTCGTGAAAAAAGTAATAAGTGTAAAGGAAAAACTATTTCGAAAGTTCAATGTCCGTACTGTTTCGAATTCTGTAAGGACCTTAAGAATCATTATTCCAAGTTTCATGAACAGAATGAATGCGAGGTTTGCGGCAACAGTTTTGTCGGAGATGTTGCTTTCAACAAGCATTTATTAAAACACAAGAAACGTTGCCCAAAATGTGTCAAATCTTTTACCACCATTGTTGGGTTTCAACAGCATTTTAAAGCTATTCACGGCGAACAGAAAGAACGATTTCTTTGCAAGAAGTGTCCGGAAGCTTTTAATCGAATGACAGATTTGACCGAACACCTAAAAGTTCAtggtgatgaaaaaatttttatctgCGATATTTGCGAAGAATATTTTCTTCAGAAAGCGCATCTGAAAAGCCATAAGCGAAGTCATACAGAGAAGCGAACGTTTCAATGCGAGATATGTAGGCAAGTGCTAACACGATCATACAGTTTGAAGAGGCACATGGATAGACAGCACAGAGGTAAGAAGAAACTACGTGAGTGTCAAATATGCAACCAGCGTTTCTTAAATCAGAGTGACCTCCTAAAGCATTTGAGTAAACACAGTAAAGACACTGAGATAACAGCCCAAAAATGCGAGTTCTGCGAAAAATCTTTTGAAAACCGTGAGCTTCTAGACAGACATATACATCAATCTCATTTGGAAATTAAATGCCGAATTTGTGGCTACGAGTTTTCGAGCAGGAGTTCCGTTTTGCGACATATGACAAGCGAACATAGCGACATAGGTGAGAAGAAACTATATGAGTGTCAAATATGCAACCAGCGTTTCTTAAGTCAGCGAGACGTCCTAAAGCATATGAGTAAACACAATAGAGGCAAGGCGATAAAAGCCCACAAATGTGAGTCCTGCGAAAAATCTTTTGAAACCAGTTGGCTTCTAGAGAGACATATACATCAATCTCATTCGAAACATAAATGCACAATCTGTGGCAAAGAATTTTCGAGCACGAGTTCCGTTTTGCGACATAGGAGACAGAAACATAGCGACAGAACCTTGTGA
- Protein Sequence
- MRKKDDIEDYSKPGVSGIGRKISGGNTSKKFASSDSEDIETEEGNDYECNTTDQQETDSEEEPENSDGKQVHGAVSSTMEFEIEDYNKPGVSGIGGDTSKKLSSSDSEDIETEDGNDYERNTTDQQETDSEEEPEKSGGKQVHDDFSSTMETESEIEAYNKPGVSGIGGTISRGGTSKKFSSSDSDEERANKVSTPDQPGSDSEDENEFCCKTCYTICKNREEFDAHVSSRCGTIKYYQLVDLKKHRLEKHRIYTCKRCGKPFSQRSDYDAHGAVHKNDNYWTCYICGKYFTYKNTFRQHMEQHKGKKGLVCKLCNLYFREDSGALRNHLAIFHPRISPVTLETGEECGREKSNKCKGKTISKVQCPYCFEFCKDLKNHYSKFHEQNECEVCGNSFVGDVAFNKHLLKHKKRCPKCVKSFTTIVGFQQHFKAIHGEQKERFLCKKCPEAFNRMTDLTEHLKVHGDEKIFICDICEEYFLQKAHLKSHKRSHTEKRTFQCEICRQVLTRSYSLKRHMDRQHRGKKKLRECQICNQRFLNQSDLLKHLSKHSKDTEITAQKCEFCEKSFENRELLDRHIHQSHLEIKCRICGYEFSSRSSVLRHMTSEHSDIGEKKLYECQICNQRFLSQRDVLKHMSKHNRGKAIKAHKCESCEKSFETSWLLERHIHQSHSKHKCTICGKEFSSTSSVLRHRRQKHSDRTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -