Dcer008770.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458317.1:32288351-32292358[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.032 2.1 10.0 1.4 1 23 294 316 294 316 0.91 2 12 0.00068 0.045 15.3 0.3 2 23 319 341 318 341 0.95 3 12 6.5e-07 4.3e-05 24.8 2.3 2 23 412 433 411 433 0.97 4 12 0.00057 0.038 15.6 0.4 1 23 439 461 439 461 0.97 5 12 0.00021 0.014 16.9 1.3 1 23 467 489 467 489 0.98 6 12 2.3e-05 0.0015 19.9 1.7 1 23 495 517 495 517 0.98 7 12 0.0012 0.08 14.5 1.2 1 23 523 545 523 545 0.98 8 12 3.6e-07 2.4e-05 25.6 1.7 1 23 553 575 553 575 0.98 9 12 0.004 0.27 12.9 0.2 1 23 581 603 581 603 0.96 10 12 3.1e-05 0.0021 19.5 1.3 1 23 609 631 609 631 0.98 11 12 0.00057 0.038 15.6 0.6 1 23 637 659 637 659 0.98 12 12 0.00067 0.044 15.3 1.6 1 23 665 687 665 687 0.98
Sequence Information
- Coding Sequence
- ATGGCCGAAATTGATGTTACAAGGTACGGAGATTTGTGCAGATTGTGTGGTACCAAGACGAATGTGGTCTTGGCCGTAAACATATTCGCAAACGAAGGCGCAGTCCGACAAATGGACAAGAAAATCGAGGCTTGTCTTCCAATCAAGGTGAATGAGACTGACGATTTACCGAAAATGATCTGCGAAAATTGCTTAATTAAGTTGGAATTATTTTTCGATTTTCGAGAGAGATCATTACGTACTGAAACCCTCCTGATAAATCTGTGCAAAGAATTAAACTCCACAAAGTCGCAGAACGTAACCTATTCACAGTTAGTAAAATTGTCGCAATCAGTCGACCATCCTGATCTTATAATGGTCCAACATCCCCAATTGATGAACGACCAAAGTCTGCAATTGGATTTGTCGAATTTGGGGCGTGAAAATATGATTGTGGAGCACGAGATTATTTTAGGCCAAGGAAACGACATAAACCCCCATTCTTTAGAGAATTTAGATTTATCTCACGATGACCTCACATCACAAAACTTGTCAAATTTGGCTCCGAGTAACGTGCACCAACTGCAAGAAGCGCCCTATGGAGGAGACAACTTGCAACTTATGAATCAAGAACACGAAATTTTAACAGGGCAGTATCGATTATCACAGGGTTTACAAATATTGGACAGTGCTTCATCAAACAGCGATTTGTTTAAAATCAGGCCGGAACACTCCTTGAAACCCCCAAATGAACGAGATGCGATCGATCACAACTCAAATAACGAACGAATTAAAGCAGAAGTAcaaaacaatgaaaatgaattGGGAGAAAAAGACGTAAAAAACGACGAAAACGACAAATACGTACCGTTATACGTAAATGATGGTAATAACGACTGGTTTTATTGCAACTTGTGCGGAAAGACTGTCAACCAGAAAGCGGAATTCCAGTTTCATTACGAACAGCATTTTAACAAGTGCACAATTTGTTTGGCCGTGTTTACAAACAGGGACGCACTTAATGCGCATAGGAAAGAAATGCACAGCCCCGAAGAAGATAAGCCAATTCGGACGAGGTTAAAACGGGCTACGGTTCCTATGAAGGAAGAGTTGAAGGATATCAAAGAAGACAGTAATAGTGATAGTGAAGGAGGTAACGACCCTGATCATATCGAAGATGAAGAGGACGAAGACGACCCAGAAATCGAATTGACTGACTCGGGGAATCCGAGGCGGAAGAAATGGTCGCCTAAAGTTTGTAAGGAATGCGGCAAAACTTACAAAACTAATTACAAACTCACTGAGCACATGCGAAAACACACGGGTGAGAAACCTTATAAGTGCAGTTCTTGCGAGAAGGCGTTCAGATCGAAAATTGGGTTGGCCCAGCACGAAGCGAAACATACTGGGCAATATGATTACGCTTGTCCTACCTGTGGTAAAGGCTTCCAATGTAAAAGTTATTTGATGGTGCATCAAAGGGTCCATTCGGATGTGAAACCGTATCCATGCACAACATGTGgtcgaaattttaaaactaaacagTCTCTGCTAGACCACACTAATAGACATTTAGGAGTAAAACCCTACATGTGTGATACTTGTGGACGAGGGTTCATCACCAAGGGCTTGTGTAGAGCGCATCAAAAAATTCACACCGGTTTAGACAATCGAAAATATTCCTGCAAAGTCTGCAATAAAATGTTCGTTTCGAAAAGCTACTTACAAACACACTTAAGGATTCACACAGGAGAAAAACCTTTCATGTGTGAGGTTTGTGGGAAGGGCTTTTTGACCAGAGTCGACCTTAAAATCCACTCCACCATGCATACTGGAGAAAAATCTTACGTTTGCGAGATGTGTGGTAAAGCTTTCGCTCGCAGAGATGCACTGAGATGCCACAGACGGTCACACACCGGCGAACGGCCTTATAGTTGCGATCAATGCGGTCAAACGTTCACCCAGTTTTCGCCGATGGCCATTCATAAAAGGCTGCACACCGGCGAAAGGCCTTACTCTTGCGAGGTGTGCGCGAAAACTTTTGTGTCCAGGTCAACGATGATGTCGCATTTTAAGAAACATGTGCGATGA
- Protein Sequence
- MAEIDVTRYGDLCRLCGTKTNVVLAVNIFANEGAVRQMDKKIEACLPIKVNETDDLPKMICENCLIKLELFFDFRERSLRTETLLINLCKELNSTKSQNVTYSQLVKLSQSVDHPDLIMVQHPQLMNDQSLQLDLSNLGRENMIVEHEIILGQGNDINPHSLENLDLSHDDLTSQNLSNLAPSNVHQLQEAPYGGDNLQLMNQEHEILTGQYRLSQGLQILDSASSNSDLFKIRPEHSLKPPNERDAIDHNSNNERIKAEVQNNENELGEKDVKNDENDKYVPLYVNDGNNDWFYCNLCGKTVNQKAEFQFHYEQHFNKCTICLAVFTNRDALNAHRKEMHSPEEDKPIRTRLKRATVPMKEELKDIKEDSNSDSEGGNDPDHIEDEEDEDDPEIELTDSGNPRRKKWSPKVCKECGKTYKTNYKLTEHMRKHTGEKPYKCSSCEKAFRSKIGLAQHEAKHTGQYDYACPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCDTCGRGFITKGLCRAHQKIHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCEVCAKTFVSRSTMMSHFKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -