Dcer008956.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
SCRT1
Assembly
GCA_949768715.1
Location
OX458317.1:34964854-34969004[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00054 0.036 15.6 0.1 1 23 316 338 316 338 0.95
2 12 7.1e-05 0.0047 18.4 1.6 1 23 346 368 346 368 0.99
3 12 7.3e-05 0.0048 18.4 0.4 2 23 376 397 375 397 0.97
4 12 1.5e-05 0.00098 20.5 0.8 1 23 403 425 403 425 0.98
5 12 8.2e-05 0.0054 18.2 2.8 1 23 432 454 432 454 0.99
6 12 6.7e-05 0.0044 18.5 0.2 1 23 460 482 460 482 0.95
7 12 3e-05 0.002 19.6 0.1 1 23 488 510 488 510 0.98
8 12 1.8e-06 0.00012 23.4 1.2 1 23 516 539 516 539 0.96
9 12 1.4e-05 0.0009 20.7 0.5 1 23 545 568 545 568 0.96
10 12 5.9e-05 0.0039 18.7 2.5 1 23 574 596 574 596 0.99
11 12 0.00027 0.018 16.6 0.4 1 23 602 624 602 624 0.94
12 12 0.47 31 6.4 0.0 1 21 630 650 630 654 0.90

Sequence Information

Coding Sequence
ATGTCGGTTTCCAGTGCAGTTCAGGACAATCCGCATTGTTTGGTGTGCAACGCAAGAGTCGGAGTATCGACAAGAAATTCACTGCACATTTTCAACAAAGAGTCGCTAACATGCACGGAACAGCCATTGAGTCAGCTGATGCGAAAAATATTAGGAGAGACAATAACAGAAGCGACTGTGCATTCGTTGCTGATCtgcaagaaatgtttcaaactGTTCGATGAAATCGATGAGCTCGAACAGAGGATTGATGAGATTAAAGTCGAACTAATTACTAATTACAAACGTTCTGTAATTAAGAGCAAGAATGGAGACAATGAGAGTGAATCAGATGCAAAGAAAATTCTCGACATACCGTCCTCCGATGATGAATTACAGGTAAATGAGTCAGTTAATATCAACTTAACCTCAAAAGTTAATTTGCAGAGTCCAATGGAGAAGAATTCCTTGCAGACATTGGAAGATATCGAATTGGAGTTGGTTAAAATTCACGGTGGTGATAAAAGTGAGGTGAACGTGAAGGCAGTTCCGCAAGTTGACTTGGATGACTCCAATCAGCCGTTTCATGGCTTTGGGTCTGATATTGTGGACGCAGGTGCCGTGGATAACTCCTCGGATTCCGATTATGAACCACCTGGCGGTGATAATGACGCGTTGCTGGAAGCCGCTGCAATAGCTGAAAAAAGTCTGCAGGATAAAGTGAGAATTAAATCTGAACCGGGATCAGAGAAGCCGATTATACTTCAAAGACGACATTACACCAGTAGTAACCACAAATTGCTACAAAGATTTATTCCGAGGAGAATCAAGGAGGAAGCTTTAGCATCgCTCGTGTCGAGAGAAGGCTCACTTTACACCTGCCTGCTCTGCGAGGGCGACGAAACGGTGTGCGGCGAAGCCAAGGCGATCATTCACCACGTCCGAGCCACTCACGAACAACGTTTGTACATTTGTGACGTATGCGGGCAAGATTTTCGAAAACGCAACGAGCTCTCGGCTCACCTCGACGAGCACGTCGCGAACGAAGAAGGGGATTTTCAGTGCGAGGTTTGCAATCGCATCTTCAGCAATTTGAGACTGTTCCGCATACACAAACGAATGCACTATCCCCAGAACAAGGCTTGGACCTGCGACACTTGCGGGAAACGTTACAGTTCTCGAAATCTGCTCGACGAACACATAAACACCCACACCGGGATACGGCCGTACATTTGCCAGCTGTGCGGCAAAGATTTCGCGTCGAAATATACGTACAAAGCGCACGTCAAGACGCACGAGGTCCGACCCAGGCCGTTCCAGTGCCAACAATGCAACAAATCCTTCCTGAGCCAGCAGAACTTAACTCAGCACGAAAGGACGCATTCGGGGATCAAAGAATTCGCTTGCCCACTGTGCGGGAAGCAGTTCGGCTCCTCCCACAATTTAGAAGTGCATTCAATCGTCCACACTGGTTACAAGCCATTTGTGTGCGGCTTGTGCGGAAAAGCGTTCGCCAGGAAGGCGGAGATTCGCGATCACGAGCGCACGCACACCGGCGAACGACCGTATCAGTGCGAATTCTGCGGCGCCACCTTCAGCCAGCGATCAAATCTCCAGTCCCACAAACGCGCCACGCATTATGACGACAAAAGATACAAATGCGACGAGTGTGGCAAAGGATTTAAGAGACGGCGACTGCTTGACTATCACATCAAAGCCGCGCACACCGGCGAGCGACCTTTTAAGTGCTCCGTGTGCGAAGCAACCTTCGTCTACCCCGAGCACTTCAAGAAGCACCGCCGGATCCACACCGGCGAGAAGCCGTTTCTGTGCGAAGTTTGCGGAAAGGCGTTCAACAGCCGGGATAATCGCAATGCGCATCGTTTCGTGCATTCTGACAAGAAGCCCTACGAATGTTTGGTTTGCGGCGCCGGTTTTATGAGGAAACCGATCCTTTACCAGCACATGCAAGCCAGCGGGCACCTGAACGACACGATCGTGGTCAATCAGCCTCGATTGACCACCGACGATGACCAGATCATCACAGTCAATGCAGACGGTGAAATGGAAATTGTGGAGAATGAGATCAGGCAGATGGAGTCCATCGGACATGGGGACGACGAAAATGCGGAAGATTCCAAACTGTACATAGCCGAGCTCAAAGATCACATGCTCGTGGAAGGTGATATGTTTGGTAATTCGAAAGGCACCGTAATCGTCGGAGATCACATGGACGATGAGAATATGGACGAAAACGAGGAAGGCATCGAACACATCATAATCGACGgagatCAATTGCAGTTTGCGGCTGAAGATGGAGAAGAGGAGGGGGAGGAAGGCGAAGAAGGGGAACAATCTCATCAAATCATGGCAAGTGAAGAAGAGTATGAGGGATTCATCACGAGTGACAGTATAGTTAATAGTGAGACCCAAGTTTTGGACACTCCTGACGGCCAGATAAGGTTAGTGCAAGTGCGTATACCGAATGCTAATGGCGAGGAAGAAGAAGCTTGGATTAAAATCATCAATGAATAA
Protein Sequence
MSVSSAVQDNPHCLVCNARVGVSTRNSLHIFNKESLTCTEQPLSQLMRKILGETITEATVHSLLICKKCFKLFDEIDELEQRIDEIKVELITNYKRSVIKSKNGDNESESDAKKILDIPSSDDELQVNESVNINLTSKVNLQSPMEKNSLQTLEDIELELVKIHGGDKSEVNVKAVPQVDLDDSNQPFHGFGSDIVDAGAVDNSSDSDYEPPGGDNDALLEAAAIAEKSLQDKVRIKSEPGSEKPIILQRRHYTSSNHKLLQRFIPRRIKEEALASLVSREGSLYTCLLCEGDETVCGEAKAIIHHVRATHEQRLYICDVCGQDFRKRNELSAHLDEHVANEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCDTCGKRYSSRNLLDEHINTHTGIRPYICQLCGKDFASKYTYKAHVKTHEVRPRPFQCQQCNKSFLSQQNLTQHERTHSGIKEFACPLCGKQFGSSHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPFKCSVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPILYQHMQASGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVENEIRQMESIGHGDDENAEDSKLYIAELKDHMLVEGDMFGNSKGTVIVGDHMDDENMDENEEGIEHIIIDGDQLQFAAEDGEEEGEEGEEGEQSHQIMASEEEYEGFITSDSIVNSETQVLDTPDGQIRLVQVRIPNANGEEEEAWIKIINE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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