Dcer026845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
CRAT
Assembly
GCA_949768715.1
Location
OX458322.1:10381092-10390310[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0011 0.07 14.7 6.3 2 23 159 180 159 180 0.97
2 13 0.0012 0.079 14.5 2.1 1 23 188 210 188 210 0.95
3 13 4.1e-05 0.0027 19.2 3.4 1 23 257 279 257 279 0.98
4 13 1.7e-05 0.0011 20.3 7.8 2 23 286 307 286 307 0.98
5 13 0.0023 0.15 13.7 3.0 2 23 330 352 329 352 0.96
6 13 0.00099 0.065 14.8 4.7 1 23 415 437 415 437 0.96
7 13 0.0012 0.082 14.5 0.2 1 23 443 466 443 466 0.96
8 13 2.8e-06 0.00018 22.8 0.6 1 23 471 493 471 493 0.98
9 13 5e-06 0.00033 22.0 1.8 2 23 504 525 503 525 0.97
10 13 2.4e-07 1.6e-05 26.2 1.5 1 23 532 554 532 554 0.97
11 13 0.00042 0.028 16.0 2.0 3 23 566 586 564 586 0.92
12 13 6.3e-07 4.2e-05 24.9 0.3 1 23 592 614 592 614 0.99
13 13 0.00069 0.045 15.3 0.1 1 23 620 644 620 644 0.92

Sequence Information

Coding Sequence
ATGATTAACAAGGAAAGCGGAGTAAGCATGGAAAAGATATGCAGATCTTGCATGTGCGAAAGCGAAGAAATGCGTAGCGTTTTTGAAACCAAGGAAGCTGCAGAAGGCCAAGCTATCCAACTATCTGATATGCTAATGGCCTGTGCTTCCGTCCAGGTGTCATCAGGCGATGGACTTCCTGTGTTGCTGTGTTTGCCTTGcgaaacgaaattaaatttagcttTCGAGTTCAAACAACTTTGCGAAAAAACCGACACCACATTGCGGGAATTAACGAATCAACCCATACCTAAGAGATCGATAAAACAAGAGTCATTAGATATAATAGTTCAACCAGATTTAAACATTCCAGGAATGTACGGCGGCGATAATTACTCCGATTCTGAAAGCAGCGACGACAATTCGTCGAAAATGAAGAGGAAACTAAAAGGTTTGAAAATTCATCAGAGACGCCATACGGGTGAGAAACTTCGCTCATGTCATTTGTGCCAGGCCAAATTTACGAGAACGAATCATTTAATACGGCACATGAAAACTCACAGTAAAGAGAGGGAAATGAAGCATATTTGTGTTGAATGTGGGATGGGTTTTAGTAGAGCGTTTCATTTGGTTAAGCATAAAAAGGAGCATAAAATTGACGGTTTAGACGGTATTAAAGAGGAGGATTTAGATGCTGCTGAAGACGACGAGAATGGAGCTGACGGTTCTCCAAGCGCAGAACACGACAGCAAGGAGAATCTGTTAATCCACAAAACTGAGGACGGGTTGCACACTTGCAAATACTGCGGAAAGACTCTCACCACTTACATGGGGCTTAAAATCCACATGAGACGGCACACCGGTTCGGACTTGGCCACTTGTGAAATCTGCCACAAATCATTCACAAAAACTAACCATTTGAAGAGGCACATGAGGACACACGGAATTTTAGAAGTTGAATTAACAAAGACCAAAGAATCTGAAAAAGGTTCCGAAAAGAAgATTATGGAATGCGAGTTTTGTGACcgacaatttaaatatcgaAAAAGTTTTGTCCATCACATGCAAATGGAACACGGAATGTCAGATGATAGCGATGCTCCCTTAAGTTCTTTGACCACCAAATCAGATGAAGTTAAAATGGAGTCCCCCGTTTCATCAGAAGGAAACGaaCCGAACCTCGACCAAACTTTCAGTAATGTGGAAGAAATGGAGGGAATTGAAGAATCTGAAAATTTACTAGCGaaagaaaacagaaaattGCACTCGTGCCACGTGTGTGAAGCGAAATTTGCCAGAGCCAATCATTTGACTAGGCACATGACTCTCCACCGGGCAGTTTTAATTCACAAATGTGCCAGATGTGACAAGGCTTTTGCGGCACCTGAATACCTAGCTCAGCACATGCAGGAGGATCACATCGACAAACCTTATGTCTGCACAGTTTGTGATAAACCTTTCAGCCGGGGAGAACATCTAATAAGGCACTTGAAAGTCCACGATGGAAGCGACGGCAAAGAAGAAAATCTGAAGTGTtcaatttgtgaaaaaattttcagCAGATCTGACCATCTCGCCCGGCATACGAAAATCCATCTCCAACAAGACAAAAGACATGTTTGCACCGAATGTGGGAAAGCTTTTAATAGACTGGATAACTTGAAGACACACCAACGCATTCACACAGGTCTCAAAGACAATTCAAGACTGCATCTTTGTATTTATTGTGGCAAAGAATTTAACAACTCCAGTAATATGttgaGGCACACCAGAGTCCACACGGGAGAACGTCCTTACGTGTGCAATTTATGCGGAAGAGCTTTTACCCAATCGAATGATCTTGCCTTGCATATGAGACGGCATACGGGATCTCGTCCTTACGCGTGCGGGATGTGTCCAGCACGGTTTATTCAATCGGGCCAATTGAAAGCTCACAGACGCTCTACAGGACATTGGATGGAGACTCAGCCGGAGCTTAAAGGGGGACACAGGGTTGAACCGGTTACCCCGTTAACGAATCCAGTtccgattaaatttaaaactcaTGGAAAATACGCTAGGAAATTCAATAAAGACGATGATCAGGATATAAAGGAACCTCGAATATTAAATCACACGGTGGGAATCATGgggaatattaatattcaaaatgacgTGGGACAGCCCCAATCGATTATTGTTGATAGCTCAAAATTGTTAGAACAATTTCACAATTCGGCGTTTGTAGGATTCGGTACTGTAATTAATGTAGCGAATTTAGCAAACAATTCGGCTGATTTTCAGAGTAAATTTAAAACGGAAGTACAAAATTTTAGTTTGGCTGATGTTAATCGCGAAGGCACTCCCATTGATATTGAAAAGATCGAGCATTCTCAGGCCAGCACAAGTAGTGCATCATTCCAAAGTAGTATTGCATCCACAACTTACTCAACAGTCACATCTACTTCAACCACATATACCAACACAGACAGTAGTTATAATTACCATTCATATGCAAATTCCTCGCAAAGAAATCCCCAAAATTTACCACAACTCCCTGTTCCTCAATTAACCAACACATTGGGCAAATATCTCAAGACAGTAAAGCCATTCCTCAATGAAGTCGAGTTCCAAACCACGAAAAAACTAGTCGAAGAGTTCCACGACGGGATTGGGGCTGAATTGCAAAAATTCTTGATAAACAAGGCAAAATCGACCGAGAATTGGTTGGAAAGTTGGTGGCTTAACAATGCCTATTTGAAATACAGGGATCCGGTCGTAGTGTATTCAAGTCCGGGGCTCGTTTTCCCGTTTCAAGCGTTTCAAACTGAGGAGGATCGCTTAAATTACACCACAGAATTGATCTTAGCCGCTTTGGATTACAAACTTCTTATTGATagtaataagATGCCCACAGATATGATGGGGAAGGATGCTCTCGACATGAATCaatacagaaaaatattcGGGACTTGCCGAATTCCCGGGATCGAGCAAGATTCTTTAGAATTTCATTCCAATTCGTCACATATAGTTGTAGCTCATAATAATCAGtttttcaaaatcaatGTTTTGAACAAAGGTCAAGTAATAAACAAGAAAAACCTTCTTGCCTTGCTTGAGGACGTCCTGAAACAGTCACCAACTCGCGGAGAATCAATTGGAGTTCTAACTGCTGAACATCGAGATAATTGGGGCAAAGCTTACCAACTCCTTATTAAAGATCCACAGAATGCCCAATCAGTCACTGAGATTCAACAATCGTTATTTTTGGTTTCTTTGGACAATCCCATGCCGATTGTAAGCAACGAAAATAGGCAAACCACAGCAAGCAAACAGTTTATTCACGGTGGAGGTAGTGGCTACAATTCTGGAAATCGTTGGTACGACAAAACTGTTCAATTTGTGATAGGAAAAGATGGTACAGTGGGGCTCACTTATGAGCACTCGCCGAGTGAAGGGCAGCCAATCGCTGTAATGACTGATTACATGGTAAACTTTAtaaaaaatggTAAAAGTACAAATGAAGGAAGTTTCACAGCTGACATCGAGAAGCTTCCTTTCACCACAAACAAGGAACTGAACGAGGCAATCAATAAGGCTAATCTTCACATAGAtaaaCTTGCAGGCAATTTGGATTTGTATTCTACAACATTTAAAGGATATGGAAAAGAGTTTATTAAATCACAGAAACTCAGTCCAGACAGTTTCATTCAAATGGCCATGCAATACGCATTTTATAGGATTCATAAAGTTCCAGCAGCTCATTATGAATCGGCTGCGACTCGAAAGTACATTCATGGCCGCACCGAAACCATCAGATCGTGTTCAATTGAATCAATTGATTTTGCTAAAGCAATGTtggattcaaataaaaataatgcagaaaAATTGGCTGCTTTAAAAGCAGCAGTTCAATCTCACAAACAATACACCGTTGAGgcAATAAATGGTTTCGGAGTTGATCGCCACTTATTAGGATTGAAATTAGCTGCATTGGAACAAGGATTGAAGGTGCCACCCCTTTACAGTGATCCCGGATTTACTAGAAGTGCCCACATGCGCATGTCAACGAGTCAGGTTGCCACAAATTGTGACGGCTTCATGTGTTACGGTCCTCTAGTTGACAATGGGTACGGTTGTTGTTACAATCCTCGCCACCATGATATGAATTTTGCTGTTTCTACATTCACCGGCAATTCAGAAACTGATGCTCGGAACTATTTTAATAATCTGGCGGCTAGTTTGGAGGATATGCAGAATTTACTTATTCACacacaaaaatcaaaattgtaa
Protein Sequence
MINKESGVSMEKICRSCMCESEEMRSVFETKEAAEGQAIQLSDMLMACASVQVSSGDGLPVLLCLPCETKLNLAFEFKQLCEKTDTTLRELTNQPIPKRSIKQESLDIIVQPDLNIPGMYGGDNYSDSESSDDNSSKMKRKLKGLKIHQRRHTGEKLRSCHLCQAKFTRTNHLIRHMKTHSKEREMKHICVECGMGFSRAFHLVKHKKEHKIDGLDGIKEEDLDAAEDDENGADGSPSAEHDSKENLLIHKTEDGLHTCKYCGKTLTTYMGLKIHMRRHTGSDLATCEICHKSFTKTNHLKRHMRTHGILEVELTKTKESEKGSEKKIMECEFCDRQFKYRKSFVHHMQMEHGMSDDSDAPLSSLTTKSDEVKMESPVSSEGNEPNLDQTFSNVEEMEGIEESENLLAKENRKLHSCHVCEAKFARANHLTRHMTLHRAVLIHKCARCDKAFAAPEYLAQHMQEDHIDKPYVCTVCDKPFSRGEHLIRHLKVHDGSDGKEENLKCSICEKIFSRSDHLARHTKIHLQQDKRHVCTECGKAFNRLDNLKTHQRIHTGLKDNSRLHLCIYCGKEFNNSSNMLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSTGHWMETQPELKGGHRVEPVTPLTNPVPIKFKTHGKYARKFNKDDDQDIKEPRILNHTVGIMGNINIQNDVGQPQSIIVDSSKLLEQFHNSAFVGFGTVINVANLANNSADFQSKFKTEVQNFSLADVNREGTPIDIEKIEHSQASTSSASFQSSIASTTYSTVTSTSTTYTNTDSSYNYHSYANSSQRNPQNLPQLPVPQLTNTLGKYLKTVKPFLNEVEFQTTKKLVEEFHDGIGAELQKFLINKAKSTENWLESWWLNNAYLKYRDPVVVYSSPGLVFPFQAFQTEEDRLNYTTELILAALDYKLLIDSNKMPTDMMGKDALDMNQYRKIFGTCRIPGIEQDSLEFHSNSSHIVVAHNNQFFKINVLNKGQVINKKNLLALLEDVLKQSPTRGESIGVLTAEHRDNWGKAYQLLIKDPQNAQSVTEIQQSLFLVSLDNPMPIVSNENRQTTASKQFIHGGGSGYNSGNRWYDKTVQFVIGKDGTVGLTYEHSPSEGQPIAVMTDYMVNFIKNGKSTNEGSFTADIEKLPFTTNKELNEAINKANLHIDKLAGNLDLYSTTFKGYGKEFIKSQKLSPDSFIQMAMQYAFYRIHKVPAAHYESAATRKYIHGRTETIRSCSIESIDFAKAMLDSNKNNAEKLAALKAAVQSHKQYTVEAINGFGVDRHLLGLKLAALEQGLKVPPLYSDPGFTRSAHMRMSTSQVATNCDGFMCYGPLVDNGYGCCYNPRHHDMNFAVSTFTGNSETDARNYFNNLAASLEDMQNLLIHTQKSKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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