Dcer008984.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458317.1:35091253-35108105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-06 8.1e-05 23.9 2.0 1 23 82 104 82 104 0.98 2 17 5.5e-05 0.0036 18.8 4.5 1 23 115 137 115 137 0.98 3 17 1.8 1.2e+02 4.5 0.2 2 23 154 176 153 176 0.88 4 17 5.5e-05 0.0036 18.8 0.3 2 23 183 204 182 204 0.94 5 17 7.6e-05 0.005 18.3 0.3 1 23 210 232 210 232 0.97 6 17 0.33 22 6.8 0.7 2 23 248 270 247 270 0.94 7 17 0.008 0.53 11.9 5.9 1 23 276 298 276 298 0.97 8 17 1.2e-07 7.6e-06 27.2 0.2 1 23 304 326 304 326 0.98 9 17 6.8e-06 0.00045 21.6 0.9 1 23 332 354 332 354 0.98 10 17 1.2e-06 7.9e-05 24.0 3.2 2 23 361 382 360 382 0.96 11 17 0.0021 0.14 13.8 3.0 1 23 389 411 389 411 0.97 12 17 4.2e-07 2.8e-05 25.4 0.6 1 23 417 439 417 439 0.98 13 17 0.26 17 7.2 5.4 1 20 504 523 504 526 0.92 14 17 1.7e-05 0.0011 20.4 2.0 1 23 532 554 532 554 0.98 15 17 0.00047 0.031 15.8 4.1 1 23 561 583 561 583 0.97 16 17 2.2e-06 0.00015 23.2 1.5 1 23 589 611 589 611 0.98 17 17 0.0021 0.14 13.7 3.1 1 23 617 640 617 640 0.95
Sequence Information
- Coding Sequence
- ATGATAATTCAGTTCCATTTGACAGATGTTTTGTTTATCTGGTGGATGAGAGTAGTTTTATTGTCAGATCAAATggataatacaaatttacaaaaatgccGAACCTGTTTCGCACAAGGTCGTCAACTTACACCACTTTCAGCGCTTAGTGAATCCAGTAATAAAATTCACATATCTGAAATGTTTATGTACTGTGCTTCTATACAGATGAAGCATATAAAGATCCACCACAACGAAGAGCCGTACAAATGTGATCATTGCGATGAAACTTTTACAAATTCAGCAACACTACAGTCTCATCAATCAATTCATGTATCGAAAGAGATGAGATCAAAAAAGCCGTTCGAATGCCGGGTGTGCCACAAAAGGTTTAAAACACGCGATTCGTTGCGTCCTCACATGCGAAGGCACCCTGGTAATTTAAAACTTGAATTACCTCCATCAGTGACTTGGCCACAACAGTGCAAATATTGTCCACTGACGTTGAACTATCTGCGCGAAAAAATTGCTCATCTCGATCAAGAACACAGCGAGTTCAAAAACGTCAGTTGTGATAAATGCGGAAAAGCATTTTTCACTAAGGTTCAGCTGAGACAACACGTAGTAATTCATGAACCTGTCAAGAGACACATGTGTCAGTATTGCGGATCGAGTTTTGCAGCCGCCTCAAATTTGATGGAACACATAAAGATCCACGGCGGCGAAAAGCTTCAACTACCACAGTCATCAGCCGGTCTCCAAGtgtgctatttttgtacagtATCATTCAAATCTTTGAAGGAAAAAATGGCACATCTCAATCAAGAACACCCTCAGTTCAAAACCTTCAGGTGCAATAGATGCAGAAAATCGTTCTTCAAAAAGAATCAAATGAAACGACACGAAAAGCTTCATGAAGAAGCCAGCAAACACAAATGCGAGGATTGTGGAGAGAGTTTCCCGTCCTCCTCGGATCTGGAAGAGCATATTCGGATTCACACCGGTGAGAAGCCGTTCAAGTGTAACGAATGCAACGCAAGGTTTTCTCGTCGCGGAGGATTAAGATCTCACATGTACGTTCATGCGACGGAAAATAATTTGGAGTGCACGGAATGCCACAAGAAATTTAAAAGGCCGAGGTCGCTCAAAAGGCACATACGCGCGCACGCTAGTGATGCCCCAACCTATTCTTGTCATTTATGTCCGAAACAGTTTAAATGGTCCAATACTTTGAAGCGACATTTGACAATTCATTCTAATGAGTGCTTTTATGCGTGCAAAGTGTGTGAAAAGGTGTTCAATCGTATGGGCAATTTGAAGGTGCATATGAAGACACATACTGGAGAGAAACCGTACGTTTGTACAATTTATCTGGAGAGATGCCGCACATGCCTTGTACAAGCCTGCGAAGTGATGCCACTTTCAACACTGAGCGTAGCCAGCAACAATACACTTTCCCTTTCTGATGTGTTTATGACATGCGCTGCAATACAGCAGGGGCATATTCGTGTCCACACCGGTGAAAAGCCTTTCAAATGTGACAAATGTAATGCATGTTTTTCACAACAGGCAATATTGCGGCAACATAAACTTTGTCACGCTTCAGTAAAGAGGTTCGAATGCAGAGAATGTCACAAAAGGTTTAGAAGAGCTGACTCGGTTAAAGATCACATGCTGGTACACAAGGTTGATCCACCAAAACATTCTTGTCGTTTATGTCAGAAAGAATTTAAACGGATTGATACTTTGAGAAGGCATCTCACAACTCAtactaatgaattttcttATGCGTGTAAAGTGTGCAAGAAGAAATTCAATCGTATGGGAAACTTAAGGACTCACATGATAACCCATACCGGAGAGAAACCATATATTTGTACAATTTGTAAGAAGGCATTTGGTTATGCGCATTGTTTGCGTGCACACACTGCTAAATATCACAGTCAATCTGATaatcataaataa
- Protein Sequence
- MIIQFHLTDVLFIWWMRVVLLSDQMDNTNLQKCRTCFAQGRQLTPLSALSESSNKIHISEMFMYCASIQMKHIKIHHNEEPYKCDHCDETFTNSATLQSHQSIHVSKEMRSKKPFECRVCHKRFKTRDSLRPHMRRHPGNLKLELPPSVTWPQQCKYCPLTLNYLREKIAHLDQEHSEFKNVSCDKCGKAFFTKVQLRQHVVIHEPVKRHMCQYCGSSFAAASNLMEHIKIHGGEKLQLPQSSAGLQVCYFCTVSFKSLKEKMAHLNQEHPQFKTFRCNRCRKSFFKKNQMKRHEKLHEEASKHKCEDCGESFPSSSDLEEHIRIHTGEKPFKCNECNARFSRRGGLRSHMYVHATENNLECTECHKKFKRPRSLKRHIRAHASDAPTYSCHLCPKQFKWSNTLKRHLTIHSNECFYACKVCEKVFNRMGNLKVHMKTHTGEKPYVCTIYLERCRTCLVQACEVMPLSTLSVASNNTLSLSDVFMTCAAIQQGHIRVHTGEKPFKCDKCNACFSQQAILRQHKLCHASVKRFECRECHKRFRRADSVKDHMLVHKVDPPKHSCRLCQKEFKRIDTLRRHLTTHTNEFSYACKVCKKKFNRMGNLRTHMITHTGEKPYICTICKKAFGYAHCLRAHTAKYHSQSDNHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -