Dcer026105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458322.1:3225887-3232183[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.089 5.9 8.7 4.8 2 23 168 189 167 189 0.95
2 16 7.2e-05 0.0047 18.4 4.2 1 23 194 216 194 216 0.98
3 16 0.00026 0.017 16.6 4.0 1 23 222 244 222 244 0.96
4 16 0.00086 0.057 15.0 1.9 1 21 250 270 250 271 0.94
5 16 1.8e-05 0.0012 20.3 0.9 1 23 278 300 278 300 0.96
6 16 7.2e-06 0.00048 21.5 0.3 1 23 463 485 463 485 0.98
7 16 1.4e-05 0.00094 20.6 6.7 1 23 491 513 491 513 0.96
8 16 2.9e-06 0.00019 22.8 2.6 1 23 519 541 519 541 0.97
9 16 0.00016 0.011 17.3 0.8 1 23 547 570 547 570 0.96
10 16 0.055 3.6 9.3 2.1 1 23 582 604 582 604 0.97
11 16 3.9e-06 0.00026 22.4 3.8 1 23 610 632 610 632 0.98
12 16 3.8e-06 0.00025 22.4 0.5 1 23 639 661 639 661 0.96
13 16 4.9e-06 0.00032 22.1 1.2 1 23 667 689 667 689 0.98
14 16 7.2e-07 4.8e-05 24.7 0.9 3 23 697 717 695 717 0.96
15 16 3.5e-05 0.0023 19.4 0.1 1 23 723 745 723 745 0.99
16 16 0.1 6.6 8.5 0.7 1 23 750 773 750 773 0.97

Sequence Information

Coding Sequence
ATGGAAGGTAACGAGTACGATTTTAATCGAATTTGTCGGGCGTGCAAGTGTGAATCTGTAGAAATGCGACCCGTTTTCGAAGATGTTGAAACAACGGGGGAAAATCCCCGAATTGACGAGATGCTAATGGCATGTGCTTCCATACAGgTAATCACCGAAGATGGTCTGCCGAGCCTAATATGCCACTCATGCCTGGAACAATTAAACAACGCATATCTTTTCAAACAACAATGCCAGAACACGGATTTAATTCTTcgagaatatttaaaaacccTGAAAAGTGGAAAGGATGTAAAACCGGATTTACTAGCACAAAACGCCGAATTAGCAGATAGTATTTTATTACACGACATATTTCATAACGATAATGACCGTAATGAGGTAGCAGATTTAGGATCGGATATTAAACCAGATTTGGAAGAACAGGCGATGTTAAGTGTCGACGAAGCAATTCTGGTTGGGgatattatccaattcttaGAAAATAATCAAGTTCTACTGACTTGTCGGACATGCAATAAACGGTTCACAACTCTAGACGGCTTGAAGTGTCACAAGCGTCTCCACACTGGTGGTATGTTTAAATGCAAGACTTGCGATAAAGAATACACTCGGTTGAATCATTTACAAAGGCACGAATTGTCGCACGGAAGACGTAAAGTGCACGTGTGTAAGATATgtaataaaactttgacacGATTCGAGCATTTAAAAAGGCATCTAGTTATACATCTGAAGGAAAAACCTTTCAGCTGTAGCACTTGTAATCGTGGATTCAACAGATCTGAACATTTATTGAATCACAGCAGACGATGTAAGGGCGATCGAGTACACATATGCGATATATGTAACAAAGGGTTTACACGGGAAGACAGTTTGGAGGTTCATAAGCGTCTACACGACAATAAAACACCCGTGTTGCCCACCTTGGATAATTTAGACAATATAGAGCAGCATTACCACGAAATTGATTACGACGGTAAATCGATATTCTCTGATAATTCTGATATCGACGGCGATAACGACGCCGCGGAATGCTTCGAGCCGCAAATAAACATCATGGAAAATACGGACGAAGCGAAAATTGAACAGGTTGCTAACTTCGGAAACGAAATTTACGCCGAGCTGGATCCGCAAGATCTGATAGaggaaaaaacgaaaattgaaaGCGAATTTTGTAACAACGAGATGCAGAACGATGACGGCAATGACCCCGGGAACGACACCGACAGCGGCCATTCCGAATATCTGCCTACGAAACCCTTGATGAAAAAGCGAGGACGAGGACGACCTAGAAAAAGTTCGCTTTCATCCAGGCGGTCGCGGGGCAGACCGTCgctcaaaattaaatcagaaCCGGAAGACTACAACGATACCGACGGAGAATACATATGTTCCGTTTGTAATAAGAGTTTTCCCCGGCTTAGTTTGCTCGCAAAACACGCCCAAAAGCACGAAGGGTTGAAACTGCACATTTGTACGGTTTGCAACAAGAAGTTCTCGAGATCGAATCATCTGAAGAGGCACATGACTTCACATTCCGAACTGAAGCCGTTTATTTGCGACATTTGCACGAAGAGTTTCAGTAGACGGGACCATCTCACTCAACATGTTAAACTGCATTCGAGGACGCAGGATTATGAATGTGATATTTGCAAAAGACTCTTCGGTCGCGCGGATCATTTGGCGAAACACCAAGCTTCCAAACATAATATAGGGGAGAAAATAATGGGCgaaaagaaattcaaatgTACATATTGTATGAAGGGTTTTACAACGGAAAAATACAGGGACGTTCATATGAAGGGACACACGGGTGACAAGAAATACCAATGTAAAACATGCGAAAAAGCATTCATTTCCAAGTCCCATCTTACAGAACACATGAAATTTCACAATGACCactcaaaaaaatttctatgttcTGAATGCGGACAAAGGTTTATTCGTAATGATTACCTTGTAATCCATATGAGGAGGCATCGCGGAGAGAAGCCATTCAAATGCAAATATTGTGGAAAAGGTTTTCCACGAACAACGGACCTTACTGTGCATGAGCGATACCACACGGGAGAAAAGACACATCTTTGTACCATATGCGGAAGAGGGTTTGGAAGAGCTTACAATCTAACAGTTCATATGAGGACCCATACCGGTGAAAAACCTTATCAATGTACCTATTGCGATGCAGCATTTGCTCAGGGCAATGACCTAAAGGCTCATGTAAGGCGTCACACAGGAGAAAGATTCCAATGTGATTTATGCACAGAAAGTTTTCTCATGGGTTATCTATTAACCCAACACAAACGTACCGTTCATGGGTTGAATGTTGTAAGTAATATTCGAAGATTACAACCCATTCACAAAGCAACTCAGCATAATGCTGATGAACCCCAACCTATAACTATTCCATTGCCTACTCCTGTTATTCCACCAACAGTCTTTAGCGCCCAAATTCAAGCACATTTGGCTGTAGCTCAACTTCAAAATCAAATAGCACATGAATAA
Protein Sequence
MEGNEYDFNRICRACKCESVEMRPVFEDVETTGENPRIDEMLMACASIQVITEDGLPSLICHSCLEQLNNAYLFKQQCQNTDLILREYLKTLKSGKDVKPDLLAQNAELADSILLHDIFHNDNDRNEVADLGSDIKPDLEEQAMLSVDEAILVGDIIQFLENNQVLLTCRTCNKRFTTLDGLKCHKRLHTGGMFKCKTCDKEYTRLNHLQRHELSHGRRKVHVCKICNKTLTRFEHLKRHLVIHLKEKPFSCSTCNRGFNRSEHLLNHSRRCKGDRVHICDICNKGFTREDSLEVHKRLHDNKTPVLPTLDNLDNIEQHYHEIDYDGKSIFSDNSDIDGDNDAAECFEPQINIMENTDEAKIEQVANFGNEIYAELDPQDLIEEKTKIESEFCNNEMQNDDGNDPGNDTDSGHSEYLPTKPLMKKRGRGRPRKSSLSSRRSRGRPSLKIKSEPEDYNDTDGEYICSVCNKSFPRLSLLAKHAQKHEGLKLHICTVCNKKFSRSNHLKRHMTSHSELKPFICDICTKSFSRRDHLTQHVKLHSRTQDYECDICKRLFGRADHLAKHQASKHNIGEKIMGEKKFKCTYCMKGFTTEKYRDVHMKGHTGDKKYQCKTCEKAFISKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDLCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPIHKATQHNADEPQPITIPLPTPVIPPTVFSAQIQAHLAVAQLQNQIAHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-