Dcer017138.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458320.1:6203623-6211688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0074 0.49 12.1 0.1 2 19 147 164 146 166 0.94 2 17 2.4e-06 0.00016 23.0 5.0 2 23 188 209 187 209 0.97 3 17 1.4e-06 9.5e-05 23.7 0.7 1 23 215 237 215 237 0.98 4 17 0.0001 0.0066 17.9 0.5 2 23 244 265 243 265 0.96 5 17 0.0036 0.24 13.0 0.7 1 23 271 293 271 293 0.95 6 17 4.7e-06 0.00031 22.1 0.7 2 23 300 321 299 321 0.97 7 17 5e-05 0.0033 18.9 1.7 2 21 328 347 327 348 0.95 8 17 6.1e-06 0.0004 21.8 3.5 1 23 355 377 355 377 0.98 9 17 1.4e-05 0.00089 20.7 1.4 1 23 383 405 383 405 0.98 10 17 4.5e-06 0.0003 22.2 1.3 1 23 411 433 411 433 0.98 11 17 0.0037 0.24 13.0 0.6 1 20 439 458 439 461 0.94 12 17 0.19 12 7.6 4.4 1 23 468 491 468 491 0.93 13 17 1.8e-05 0.0012 20.3 2.5 1 23 497 519 497 519 0.95 14 17 4e-05 0.0026 19.2 1.0 2 23 560 581 559 581 0.96 15 17 9.5e-06 0.00063 21.2 5.5 1 23 587 609 587 609 0.97 16 17 6.5e-05 0.0043 18.5 1.7 2 23 616 637 615 637 0.97 17 17 4.6e-06 0.0003 22.2 0.6 1 23 665 687 665 687 0.97
Sequence Information
- Coding Sequence
- ATGGGACAGCACAGTGATTATGACGCTTCCCAAAATGATTCCGATCCTCTCGCATTTAATAATCAGATCAAAGTGGAAGATATAAACTACATGACCGAATGTAATCTCGTCAATCAACCTGAGCCTGTGGAAGAAAATGATGATGATTTGAATTCTTCTGAATTAATGGTCAAAACAGAAGAAGTTATAATTAAGGATGAAGTTATGGAAGAACACAGTCGATATATTATTTCCCGGTACGGCACAAATCCTCCTGCATTTTGTATCAGAGACAATATAATGAATGTTGAGATCGAAGTGGACCCCACAATGTGCAATGATTTAAACAACAGGAGTACATGCTACATTGACATAGCCAAACTGCAGCTCGCGTTAGAAGAAAAACAAGTCCCCCGTGCAGTTCCTGAACCAAAGAGTCACACCGGCGAAAAACCGGTTGAATGTCCCAAATGCAACAAACTTTTCTCATCGAATTTTGGGCTGAAAATGCACGCTGCGTTTTATGAGGGCAGGAAACCTTGTTTGCAAGTTGAAAAACTGATCAAGCCCCGTCCCTCTAAAATGTGCAAATACTGCGGAAAATGCTTCACCAGACATGTGGGACTTCAAAGACACATCAGGATTCATACAGGCGAAAAACCGTTTGAATGCGTCGAATGCCAGAAACGATTCACTCAAAAAAACGACCTAAACGTGCACATCATGACTCACAGGACTGACAGGCCCGTTCAATGCCCCCAGTGCGAACGGTCGTTTAAGCTTCGTCAGCAGCTCACAAGGCATCTGGTAGTTCATTCAGAGCAAAAACCGTTTCAGTGTGCGACGTGCCAAAAGTGGTTTTCGCGTAAAGCGGACCTTGCCAGGCACTCATTTGTTCACACCGACGAAAAACCGGTGAAATGTAACGTTTGTGAGAAGTCTTTCAAAAATAAGAAAGGTCTTGCGCAACACATGATGCTTCATGCGGAAGTGAAGTCGGTTAAATGCCCCAATTGTCCGAAGAGTTTTAAATTCAGCTGGCAACTTAAGAAACACATTTGCAATGGCAGTCGCGAAAAACCGTTCAAATGTCCGGAATGCAACAAACGCTTTTTTCGAAGTTGCAATCTGAAAATTCACATTTCGGTGCACGAGGtcaagaaaccttttaaatgccacGTTTGTGACAGAgcttttaaagttaatttggGCCTCAAAAAGCATATGTTGATTCACACGGACCAGGAAACGTTTCAATGTGATATATGTCAGAAAAGATTTGTACAACGTGGTTGGTTTAAGAAACACATGTTGCTACATACAGATCAAAAACCATTTCCTTGTGACCACTGTCCGAAGAGTTATTTAACCAAAGGTAAACTTCAATGGCACATGTGGATTCATACCAGGCAACCACAGTTTCACAATTGTGACAAGTGCCACAagcaatttttgaaaagagTTGATCTTACCAGACATACGTTATTGGTTCATAGTGTTTGGAAACCGTTTCAGTGTAATAAGTGCCAGAAATCCTTTTCGAAAAAGGCACTTCTTAACCGGCACTCCTTGCTCCATACTGTTGAAATACTAATCAAACCAGATCCTGGATATGAAGAACTGCAGGTGGGTCATTGTGGCAAATCCAACTCCAAAGAGCCCATTGTTATTCAGAGAAGTGATGGTAACAAACCCATTAAATGCCCTGAGTGTGGTAAATCGCTTCAGACTCGCCAGCATCTTCGAAGGCATTTGGTGGTTCATTCCAATCAAAAACCTTTTCAGTGTAAGACTTGCCAGAAGTGTTTTTCACGTAAAAGTGATCTTGCCAAGCACACATACGTTCATACCAATGAAAAACCAATGAAATGTAATTATTGTGAGAAGTCCTTCAAACATAGGGAAGGCCTTGGGAAACACTTGATTGTCCATGCAGATGAATATGGTGAATCCAAGCCCAAAGTGCCCTTGACTCGACGAAGTCAGAAACGTTTAAATGATGGTAGTAAACACTTTAAATGCCCCGAGTGTGATAAATCATTTAAGATTCGACAGCTTCTTCGAAGGCATTTGGTGGTTCATTCCGATCAAAAACCATTTCACTTAGTTGTACAGCACGGAAGGGTGGTGTTTGTAGGGGTAGTAGGTGATGGAGATGTCGATGGTGGTGGAGGTGGCGGTGGCGGTGACGGTGGAGGTGTAGGTGGAGGTGTAAGTGGTGGAGGTTGTCGGGTGGTGGTTGGCGGTGGGGGACAGAACGGTGGACGGCAGAGAGGGTTCCAACCAGGTGGTCTCAAAATGAAGTCCAAAACTTTAGAGCCCGCGCTTAAAAGACACGCGATGATGATACATCGTTTCTTTGTTTGA
- Protein Sequence
- MGQHSDYDASQNDSDPLAFNNQIKVEDINYMTECNLVNQPEPVEENDDDLNSSELMVKTEEVIIKDEVMEEHSRYIISRYGTNPPAFCIRDNIMNVEIEVDPTMCNDLNNRSTCYIDIAKLQLALEEKQVPRAVPEPKSHTGEKPVECPKCNKLFSSNFGLKMHAAFYEGRKPCLQVEKLIKPRPSKMCKYCGKCFTRHVGLQRHIRIHTGEKPFECVECQKRFTQKNDLNVHIMTHRTDRPVQCPQCERSFKLRQQLTRHLVVHSEQKPFQCATCQKWFSRKADLARHSFVHTDEKPVKCNVCEKSFKNKKGLAQHMMLHAEVKSVKCPNCPKSFKFSWQLKKHICNGSREKPFKCPECNKRFFRSCNLKIHISVHEVKKPFKCHVCDRAFKVNLGLKKHMLIHTDQETFQCDICQKRFVQRGWFKKHMLLHTDQKPFPCDHCPKSYLTKGKLQWHMWIHTRQPQFHNCDKCHKQFLKRVDLTRHTLLVHSVWKPFQCNKCQKSFSKKALLNRHSLLHTVEILIKPDPGYEELQVGHCGKSNSKEPIVIQRSDGNKPIKCPECGKSLQTRQHLRRHLVVHSNQKPFQCKTCQKCFSRKSDLAKHTYVHTNEKPMKCNYCEKSFKHREGLGKHLIVHADEYGESKPKVPLTRRSQKRLNDGSKHFKCPECDKSFKIRQLLRRHLVVHSDQKPFHLVVQHGRVVFVGVVGDGDVDGGGGGGGGDGGGVGGGVSGGGCRVVVGGGGQNGGRQRGFQPGGLKMKSKTLEPALKRHAMMIHRFFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -