Dcer008521.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458317.1:30013965-30018429[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.062 4.1 9.1 0.2 2 23 33 56 32 56 0.90 2 24 0.0041 0.27 12.8 6.2 1 23 63 85 63 85 0.98 3 24 1.1 74 5.2 1.1 2 23 92 114 91 114 0.85 4 24 0.00055 0.036 15.6 0.4 1 23 119 141 119 141 0.97 5 24 0.0051 0.34 12.6 2.8 2 23 149 171 148 171 0.92 6 24 4.8e-05 0.0032 18.9 0.2 2 23 177 198 176 198 0.96 7 24 0.015 1 11.1 0.0 2 20 204 222 204 224 0.93 8 24 0.2 13 7.6 0.3 2 23 286 309 285 309 0.89 9 24 0.00069 0.046 15.3 3.4 1 23 316 338 316 338 0.98 10 24 9.3 6.1e+02 2.3 2.8 3 23 346 367 344 367 0.84 11 24 0.00066 0.043 15.4 0.2 1 23 372 394 372 394 0.96 12 24 8.1e-06 0.00054 21.4 2.9 1 23 401 423 401 423 0.98 13 24 1.8e-05 0.0012 20.3 1.6 2 23 429 450 428 450 0.96 14 24 1.2e-06 7.8e-05 24.0 2.0 1 23 456 478 456 478 0.98 15 24 1.5e-06 0.0001 23.6 2.6 1 23 484 506 484 506 0.98 16 24 0.024 1.6 10.5 1.6 1 23 539 563 539 563 0.87 17 24 0.00018 0.012 17.2 2.3 1 23 570 592 570 592 0.98 18 24 0.11 7 8.4 0.6 2 23 599 621 598 621 0.91 19 24 0.00071 0.047 15.3 4.4 1 23 626 648 626 648 0.98 20 24 0.0018 0.12 14.0 1.3 2 23 656 678 655 678 0.92 21 24 0.0023 0.15 13.7 0.2 2 23 684 705 683 705 0.95 22 24 3.2e-06 0.00021 22.6 1.0 1 23 711 733 711 733 0.98 23 24 2.5e-06 0.00016 23.0 2.9 1 23 739 761 739 761 0.98 24 24 0.065 4.3 9.1 3.2 1 23 767 790 767 791 0.97
Sequence Information
- Coding Sequence
- ATGACTTCAATCTATTTCAGGACTTTAGACACTATTGAAGGCATTGAGATATACATTCGGTCTATAAAACCTTACAAAACCCCGGACAACGATTTAAAATGCCCTATTTGTACAAGAGGACCCTTTTCATTAAGAAAGGAGTTGAAACGACACATGGTGACCGTACACGCCAAGGACAGAAAAATTTTCGAGTGTTCAACGTGTCACAAACAATTTTCATTGAGACAACATCTACAGGTACACGAAAAACGTCACAATCTCGAGTATACAGTACGTTGTAAAGTTTGTGGAAAAGGCTATTACAAGGAAGCCGAATGTAGACTCCATGAACAAGTCAAACATGGTAAAAATCCATTCACGTGTGACATTTGCGGGAAAAGTGTCACTGATGCTCTGCGCTTTAGGAGGCATCAAGAGTTGCACACATCTCGCagcaaaaatgttaaatgcaGTCACTGTGACCAATCATTCACATCAATCCGATATATGAAAAGACACGTTGATTACAAGCACTCGAGTGAACCTTGTGCTTGCGACATATGTGGTAAAGTGTTGTCAGGTCAAGCCGGTTTAAAGAAGCACATGAATATTCATAATCGGCGGAAACCAAAATGTGAAACATGTGGGAAAACTGTTACTACAGCAGCTAGTCTAGACTTACATTTAGTTACTAACCCCGAGGAAGAGAAGCATAAATGTGACGGGGCCGAAGACCCTGTTACAGACCCAACCAATTTAGTTGTTCATAAAAAATCTCATACTGAAGAAGTGTTACATAGGAATTTAGACACTAAAAAAGACATTGAGCTATACATTCAGTCGATAAAACCTTTCAGAACACCggacaataatttaaaatgtcccGTTTGTAAAAAAGGGCCTTATTCATTACGAAAGGAATTGAAACGTCACATGGTGACTATACACGCCAAGgacaaaacaattttcgaGTGCTCAACGTGTAACAAACAATTCGCAATGAAGCAACATCTACAGATACATGAAAAACGTCACACTCTCCAATACGCAGTACATTGCAAAACGTGTGGAAAAGGTTATTACAAAGAAGCCGAATGTAGACTGCATGAGCAAGTCAAACATGGCGATAATCCATTCACGTGTGATATCTGCGGGAAAAGCGTTTCTGACGCTTTGGGTTTTCAGAGGCACAAAGAATTGCACACACCTCGAAACAGAGATTTTAAATGCAGTCACTGTGACAAGGCGTTTACATCAATTGTAAATATGAAGAGGCATATGTTACAGCACAAAACTGAAGCTTGCATTTGTGACATTTGTGGTAAAACGTTGTCAAGTCAGACCAGTTTAAAGAATCACATTAATAGTCACAAAGGGTTGAAACCTCATAAATGCGATTTGTGTGGAAAAACTTTTACTTCATCGTCTAATTTAAGCTTGCATTTGGTTACTCACTCTGGCGTAAGGAAGCATAAATGTGATGAGTGCGGAAAATCCTTTACGCAACGATCTACGTTGGTTGCTCATAAAACAACTCACACTGGAGAACGGCCTTATAAGATTTTGGATACTATAAGCGACATTGACAGATATATGAGATATAAAGTTAAACCGTTCAAAAAACCGGAGGGCGGGTACGAATGTCCCATTTGTAAAAGAAAGTTTCATACATTACCATCGCAATTGAAAAAACATATAATACTCAAACACGCGAAGGACAAACCAATTTTCCAGTGCTCAATTTGTGACAAACAATTTATGTTGAAAGGCCATTTACAGGTGCATGAGAAACGCCATAATCGTGAATATCTTGTGGTCTGTGATATATGTGGAAAAGGTTTTTATGTTGAATCCGAATGTAGACTGCACAAGCAAGTCAAACATGGCGATAATCCATTCAAATGTGACGTCTGCGGCAAAGGTTGTTGCGACAAGTTAACGTTACAGAGGCACAAAGCAACGCACACATCTCGCaccaaaaatgttaaatgtgttCACTGCGACAAAACATTCACATCAATTGTAAATATGAAAAGCCATGTTGCTTATAAGCACTCAAACGAACCTTGCGTTTGTGATATATGTGGTAAAGTGTTTTTAGGTCCGGGCTTTTTGAGAACCCACATGAATGCTCATAATGGGTTGAAACCTTATAAATGTGATTTTTGTGGAAAGAGTTTTAGTTCAGTAAGTTATCTAACATTGCATTTGGTTACCCACACGGGTGAAAAGAAGCATAAATGTGACGAGTGTGGAAAGTCCTTTACCCAGCGCACTAGTTTAGTTATTCATAAAAGATCTCACACAGGAGAACGGCCATATAAATGTGACTTATGCGAAGATGCTTTCGTATCCAGACATTTATTGACAGGTCACTTGAAAAAGAAGCATCATGTAATcattttatcCGGGGACGCACTGTATAAGCTCAACGAGAAAATCATTGAACAaaagttttatgaaaatgtggcaTGGGCACTGATTAAACCACGAAATGAAAAGATAAGTGAAATTCTGCAATTGCCGATTGAATTACGAAGACGCGCTAAAATTCTTTTAGACCAACCATCAAGGCCTAAAGAGAGACAAGGATCTTTAGGGCGCTGCCATGAATGTGGTcgaaaaagaaacaaatctACAAGGAGATGGTGCAAGAAATGCAATAACTGGATATGCAGGGACCATCTAATAGACATTTGTGTTAGTTGTGCAGAAAGTGCAGATTAA
- Protein Sequence
- MTSIYFRTLDTIEGIEIYIRSIKPYKTPDNDLKCPICTRGPFSLRKELKRHMVTVHAKDRKIFECSTCHKQFSLRQHLQVHEKRHNLEYTVRCKVCGKGYYKEAECRLHEQVKHGKNPFTCDICGKSVTDALRFRRHQELHTSRSKNVKCSHCDQSFTSIRYMKRHVDYKHSSEPCACDICGKVLSGQAGLKKHMNIHNRRKPKCETCGKTVTTAASLDLHLVTNPEEEKHKCDGAEDPVTDPTNLVVHKKSHTEEVLHRNLDTKKDIELYIQSIKPFRTPDNNLKCPVCKKGPYSLRKELKRHMVTIHAKDKTIFECSTCNKQFAMKQHLQIHEKRHTLQYAVHCKTCGKGYYKEAECRLHEQVKHGDNPFTCDICGKSVSDALGFQRHKELHTPRNRDFKCSHCDKAFTSIVNMKRHMLQHKTEACICDICGKTLSSQTSLKNHINSHKGLKPHKCDLCGKTFTSSSNLSLHLVTHSGVRKHKCDECGKSFTQRSTLVAHKTTHTGERPYKILDTISDIDRYMRYKVKPFKKPEGGYECPICKRKFHTLPSQLKKHIILKHAKDKPIFQCSICDKQFMLKGHLQVHEKRHNREYLVVCDICGKGFYVESECRLHKQVKHGDNPFKCDVCGKGCCDKLTLQRHKATHTSRTKNVKCVHCDKTFTSIVNMKSHVAYKHSNEPCVCDICGKVFLGPGFLRTHMNAHNGLKPYKCDFCGKSFSSVSYLTLHLVTHTGEKKHKCDECGKSFTQRTSLVIHKRSHTGERPYKCDLCEDAFVSRHLLTGHLKKKHHVIILSGDALYKLNEKIIEQKFYENVAWALIKPRNEKISEILQLPIELRRRAKILLDQPSRPKERQGSLGRCHECGRKRNKSTRRWCKKCNNWICRDHLIDICVSCAESAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -