Dcer004578.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458316.1:31545063-31549266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.1e-05 0.006 18.1 0.6 2 23 66 87 65 87 0.97 2 17 3.4e-05 0.0023 19.4 3.0 1 23 92 114 92 114 0.97 3 17 0.02 1.3 10.7 5.2 1 23 118 140 118 140 0.98 4 17 0.00023 0.015 16.8 0.8 1 23 144 167 144 167 0.97 5 17 0.00015 0.0097 17.4 0.3 2 23 184 205 183 205 0.96 6 17 0.0016 0.1 14.2 3.0 1 23 211 233 211 233 0.98 7 17 2.2e-05 0.0015 20.0 1.0 1 23 241 263 241 263 0.98 8 17 6.7e-08 4.4e-06 27.9 1.4 1 23 267 289 267 289 0.98 9 17 0.0066 0.43 12.2 5.2 1 23 295 317 295 317 0.98 10 17 3e-06 0.0002 22.7 0.2 1 23 323 345 323 345 0.97 11 17 0.00045 0.03 15.9 2.1 1 23 351 373 351 373 0.97 12 17 7.1e-07 4.7e-05 24.7 1.8 3 23 381 401 379 401 0.96 13 17 1.5e-07 1e-05 26.8 0.1 2 23 407 428 406 428 0.97 14 17 2.1e-05 0.0014 20.1 1.3 1 23 434 456 434 456 0.98 15 17 0.00059 0.039 15.5 0.2 1 23 462 484 462 484 0.98 16 17 2.5e-07 1.7e-05 26.1 0.9 1 23 490 512 490 512 0.99 17 17 1.6 1e+02 4.7 0.0 1 19 517 535 517 538 0.85
Sequence Information
- Coding Sequence
- ATGGCTCTGGCTTCTGTACAgATTTCGTACGAAGACGGGCTGCCAGGAATAATATGCCCCAGTTGCTCAAAACAAATAGAAGATGcatatattttaaagttacaatGTGAAGAATCAGATGTAACTTTACGACACTTTGCCAGTAATAAAACACCAAATGTTCctatttcacaaaaactgATGGTGGAAAAATTAGTTTGTCAGATTTGCAAAAGATCATTCGAAGAATCACGCGATCTAAAATTACACTTGAACACCCACAAAAAAAGTTTGCATTCTTGCGAGATCTGCTCACAATCTTTTGTTACATCAAGCGAATTGTCTCGACACAAGAAAaggcacaataaaactttccCTTGTTGCATTTGCAACGTGGAATGTAAAACCCGAACAGAACTGAACTCTCACAAGAAGACCCATAAAGAAACCCACGTATGTACCATTTGCGATGTGAAATATCAGCAGAATGACAAATTAATCAATCACATGTTAACGGAACACACTGAAAAGGAAGTACCTTTTGACGAACAAAAGCCAGAAGGAGTTTTAATGTGCAACATTTGCAATAAAACGTATTTAAAGGCTAGCAATCTGACTGCACACATGGGGACCCACACAGGAATCAAACCCTATGAATGCACAATTTGCAACAAACGGTTTACGCAAGGACGGGCATATGCTTGCCACATGCGTACTCATCTACACAATTTGGAGAAACCTTACGCATGTCCCACGTGTCACAAGGAGTTTATCCGAGAGACTCAACTAGCAGTGCATTTGAAAAAGCACAGTCAAAATTTTGTCTGCACTGTTTGCGGAAAAAGCTACTGCAACTCTGGTAATTTAAAGGCTCACATGCGTCTGCACACTGGCGACAAACCGTACTCATGCCACTTGTGCGGAAAGAAATTTGCGCAAAGTAACGCGCACTCATATCATATGAAAACACATTCTGGCGAAAAACCGTTCATTTGTGAATTGTGTCCAAAAGCTTTTACAACAAATGGTCAACTCATAAATCACCGTCGATTGCATACCGGCGAGCGCCCTTTTGCGTGCAACGTTTGTAACAAAAGGTTCACGCAAAAAGTTGCCCACACGATCCACATGATGACGCACACGGGGAACAAGCCTCATTTGTGCAGCATTTGTGGAAAGAAATATTCACAAAATAGTCAACTCATCGAACATATGAGGTCGCACACCGGCGAAACTTTACAGTGCAACATTTGTGGGAAAGGATACTCAACTGCAGGTAACTTAGCGGCTCATATGAAAACCCATTCTGGTATTAAACCTCACGTATGCTCAGTTTGCAATAAAGGATTTTATGTTGCTAATAAATTGGCCAAGCACATGAGGACGCACACGGGGGAACGTCCCTATGCTTGTACAGTGTGTGCAAAACGTTTTACAAGTTCGGATGTGATGAAAGTGCATGTTCGGATACACACGGGTGAAAGACCTTATCGATGTGAAGTTTGCAGCAAAGGTTTTACGAATAATTCTCAGTTGACTGTGCACTTGAGGTCGCATGGTCAACGGTCTTACAGCTGCAATGTGTGTTATCAGGGATTTGCAAGTTCTGCAATTTTAGCAGTTCATGCGACTTCTTGTGctTTAAGATGTTACACGTGCACAATTGGTCAAGATGATATTGATCAGAGATGCGTAACAGATCCAGCTTCAGTAGAAAGTGGTTCTGCCATTACCAATTGCAACAAGCAATATTGCACCTCAATGCGCATGGAATATCTTgatccaaaaaataaagtaagtTCAATGTATCGCAGTTGTGAAGACAAtccaaacaataaaaatgtagtagtCGAGGATGGAACGTACCGTATTTATTACAAAGCATGCCAAGAAGATTTGTGTAATGGAGGCACAGGCAAAGAAATAGGAGGAGGAAACGGGATTTTAGGTGATGGCGCAGGGTATGGCACCTTTAAAGTGAAAGGAATTGGTAGTGGTGcacttcaattaaaaaattcagttttacTCATTACAACAGTTATTTTAGGAATtacattttacaatttataa
- Protein Sequence
- MALASVQISYEDGLPGIICPSCSKQIEDAYILKLQCEESDVTLRHFASNKTPNVPISQKLMVEKLVCQICKRSFEESRDLKLHLNTHKKSLHSCEICSQSFVTSSELSRHKKRHNKTFPCCICNVECKTRTELNSHKKTHKETHVCTICDVKYQQNDKLINHMLTEHTEKEVPFDEQKPEGVLMCNICNKTYLKASNLTAHMGTHTGIKPYECTICNKRFTQGRAYACHMRTHLHNLEKPYACPTCHKEFIRETQLAVHLKKHSQNFVCTVCGKSYCNSGNLKAHMRLHTGDKPYSCHLCGKKFAQSNAHSYHMKTHSGEKPFICELCPKAFTTNGQLINHRRLHTGERPFACNVCNKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLIEHMRSHTGETLQCNICGKGYSTAGNLAAHMKTHSGIKPHVCSVCNKGFYVANKLAKHMRTHTGERPYACTVCAKRFTSSDVMKVHVRIHTGERPYRCEVCSKGFTNNSQLTVHLRSHGQRSYSCNVCYQGFASSAILAVHATSCALRCYTCTIGQDDIDQRCVTDPASVESGSAITNCNKQYCTSMRMEYLDPKNKVSSMYRSCEDNPNNKNVVVEDGTYRIYYKACQEDLCNGGTGKEIGGGNGILGDGAGYGTFKVKGIGSGALQLKNSVLLITTVILGITFYNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -