Dcer008510.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458317.1:29966636-29973383[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00079 0.052 15.1 0.9 1 23 31 53 31 53 0.96
2 28 0.0068 0.45 12.2 1.0 1 23 57 79 57 79 0.97
3 28 1.3 88 5.0 1.9 1 20 85 104 85 108 0.81
4 28 7.1e-05 0.0047 18.4 0.8 1 23 114 136 114 136 0.99
5 28 0.0097 0.64 11.7 2.3 1 23 142 165 142 165 0.97
6 28 3.3e-06 0.00022 22.6 3.6 1 23 174 196 174 196 0.98
7 28 0.0029 0.19 13.3 1.6 3 23 203 223 199 223 0.94
8 28 7.9e-05 0.0052 18.3 0.8 1 23 229 251 229 251 0.99
9 28 0.00026 0.017 16.6 1.0 1 23 257 279 257 279 0.98
10 28 0.00028 0.019 16.5 0.8 1 23 372 394 372 394 0.97
11 28 0.016 1 11.0 0.5 1 23 398 420 398 420 0.97
12 28 0.15 9.6 8.0 1.5 1 23 426 449 426 449 0.90
13 28 0.00072 0.048 15.2 2.0 1 23 455 477 455 477 0.98
14 28 0.0016 0.1 14.2 2.3 1 23 483 506 483 506 0.97
15 28 5.1e-07 3.4e-05 25.2 3.2 1 23 515 537 515 537 0.98
16 28 0.0018 0.12 14.0 1.4 3 23 544 564 542 564 0.97
17 28 5.6e-05 0.0037 18.7 2.8 1 23 570 592 570 592 0.98
18 28 0.00011 0.0073 17.8 2.3 1 23 598 620 598 620 0.98
19 28 9.3e-05 0.0061 18.0 0.5 1 23 632 654 632 654 0.97
20 28 0.0037 0.25 13.0 0.7 1 23 658 680 658 680 0.97
21 28 3 2e+02 3.8 0.0 1 10 686 695 686 705 0.91
22 28 0.00031 0.021 16.4 0.6 1 23 715 737 715 737 0.98
23 28 0.03 2 10.2 2.2 1 23 743 766 743 766 0.95
24 28 2.5e-05 0.0017 19.8 5.8 1 23 775 797 775 797 0.98
25 28 0.0051 0.34 12.6 1.5 3 23 804 824 800 824 0.94
26 28 0.00034 0.022 16.3 2.4 1 23 830 852 830 852 0.99
27 28 0.0011 0.075 14.6 4.9 1 23 858 880 858 880 0.98
28 28 0.0011 0.071 14.7 1.1 1 21 886 906 886 907 0.95

Sequence Information

Coding Sequence
ATGTGGGACATCAGAGATCACTTTGCAGACTTGCACCCTGGACGAAATCCTCGTTTCAgtaagaaatttaaacaaaacaaggTCCAATCTCACAACTGCGAAATATGTGATGAAGACTTTACTTCGTTAAACGACCTCGAAGAACACCTTCACATTCACGACTATCAGTTTGTGTGCGAAACGTGCGACGAGAAATTCAAGAAAATCGTTGATTTTACCCTGCACTTGTACAAACATAACGCAGAGAAAATCTTTCAATGTCAAATTTGCGATTACTCGACCAAGAAGCGCAACTGCATTCTGGGTCATTTGGGCAACACCCACCAAAAAAATACTCAGTACAAATGTGACGAGTGCGGAAAACGGTTCGCGACGTTTCTGTGGTACAAAGAACATCAAAACGTCCACACCAACGCGCATCCATATTCCTGCGATATttgcgaaaaaaaatttcctttCATTCACAGTTTGTACTACCACAAAAACACCGCGCATAAAGGGGTGCTGGATGTTGTTCTATTTAAGTGCAATCAATGCGGAAAAGAGTACAAACACAAGAGAAACCTGACGTTGCACATGCTAATTCACACGGGAAAATGCCCGATTTGTGAAATTTGCGGAAAACAGTTGTCCAGTAAggagaaattgaaatttcacatgcGCATACATACAGGTTATAAACCATACAAGTGCTCGTACTGCAACCAAACGTTCTCTGTCAAAGGTAGGCTAATAGAGCACGAACGGGTTCACACGGGTGTGCGGCCGTATGCTTGTCAATATTGCAACAAAGGATTTACTCAACGAGGTAGCAGGACGATACATGAGAGGATGCATACGGGGGAGAAACCTTACgtgtgtcaattttgtaataaaggGTACGACTGCACCCTCGACGAGAGGATAAATGACACTGAAATCACACATCCAGAGAATAAACTTTCAAAAAAACGTCCTCGTTATAATTATAAGGATGACgacacttttcaatgtcacgTGTGCAACGATGGCAAAGAATGGAAATTGTGGGACATCAGGGACCACTTTAAAGAATCACACCCGGGAAAGAATCCtcgtttcaataaaaaatttaaacaaagcaCGATTCAATGTCACAACTGCGAAATTTGTGACAAAGACTTTACTTCGTTGAACGACCTCGATGAGCACCTCAATTCGCACGATGATCAGTATGTGTGCGAAACGTGCGacgcaaaatttaaaaaaatcgcagATTTTACCCTGCACGTGTACAAACATAACAAAGAGAAAATTTTCCAATGTCAAATTTGCGATTACTCGACCAAAAAGAATAGCTGTATTCTCGGCCATTTGGCCTACATCCACCAGAAAAATACTCAATATAAATGTGACCAGTGCGGAAAGCGCTTCGCGACGTTTCTGTTTTATAAAGATCATCAAAACGTCCACACCAGCACGCATCCGTATTCCTGCGATATTTGTGAAAAAAAGTTTACTTTCACCAGCAGTTTGTACTACCACAAAACTACCGCTCATCAAGAGTCGCTCGATATTGTCTTGTTTAAATGCGACGTGTGCGGGAAGGAGTTCAAGCGCAAACACACTCTAAAATCTCACATGCTCATTCACAAGAGAAAACGTCAGATCTGTGAAATTTGCGGAAAGGAGTTGTCaagtaaagaaaaattgaaatgccaCATGCGCATACATACAGGTTATAAACCGTTCAAATGCTCACATTGCGACAAGACGTTCACTCTTAAGGATAGGTTGATAGAGCATGAACGGGTTCACACCGGCGAGCGACCGTTCCCGtgtaaatattgcaaaaaaggTTTCACTCAACGAAGTAGCAGGACGATACATGAAAGAATGCACACGGGGGAAAAACCTTACagTCAGATTGAATGTCACAACTGCGAAATTTGTGACAAAGATTTTGCATCGCTCAATGACCTCAATGAACACCTCAATTCGCACGATGATCAGTACATATGCGAAACGTGCGACGAGAAATTCAAAAGAGTCGTAGATTTCACCCTACACGTTTACAAAcacaataaagaaaaaaaattccaatgtCAAATTTGCGATTACTCGACCAAATGGATGGCCGCTATTCTCACCCATTTGGGCAACACTCACCAAAAAAATACACAGTACAAATGTGACCAGTGCGGAAAACGGTTCGCAACATTTCCGGTGTATCAAGAACACCAAAACGTCCACACCAACGCGCATCCATATTCCTGcgaaatttgtgaaaaaaagtTTGCTTTCATTCACAGTTTGTACTACCACAAAAATAACGCGCATAAAGAGTTGCTGGATGCTGTTCTGTTTAAGTGCAATCATTGCGAAAAGGAGTACAAACACAGGAGTAGTCTAACATCGCATATGCTCATTCACACGGGAAAATGTCCGATTTGTGAAATTTGCGGGAAACAGTTGTCCagtaaagtaaaattaaaattccacATGCGAATTCATACAGGTTACAAACCGTACAAGTGTTCTCATTGCAAACAGACCTTTTCTGTCAAAGGTAGGCTAATAGATCATGAACGAGTTCATACAGGTGAGCGACCGCACACCTGTCAATATTGCAACAAAGGTTTTACCCAACGAAGTACCAGAACGATACATGAGAGAAGGCACACGGGGGTGAAACCTTATGTGTGTCAGTTTTGCAATAAAGGCTATGTTTCGAAAAGCACTTTAAACACGCACAAGAAAAATTGTGAAGGACTGGTATAA
Protein Sequence
MWDIRDHFADLHPGRNPRFSKKFKQNKVQSHNCEICDEDFTSLNDLEEHLHIHDYQFVCETCDEKFKKIVDFTLHLYKHNAEKIFQCQICDYSTKKRNCILGHLGNTHQKNTQYKCDECGKRFATFLWYKEHQNVHTNAHPYSCDICEKKFPFIHSLYYHKNTAHKGVLDVVLFKCNQCGKEYKHKRNLTLHMLIHTGKCPICEICGKQLSSKEKLKFHMRIHTGYKPYKCSYCNQTFSVKGRLIEHERVHTGVRPYACQYCNKGFTQRGSRTIHERMHTGEKPYVCQFCNKGYDCTLDERINDTEITHPENKLSKKRPRYNYKDDDTFQCHVCNDGKEWKLWDIRDHFKESHPGKNPRFNKKFKQSTIQCHNCEICDKDFTSLNDLDEHLNSHDDQYVCETCDAKFKKIADFTLHVYKHNKEKIFQCQICDYSTKKNSCILGHLAYIHQKNTQYKCDQCGKRFATFLFYKDHQNVHTSTHPYSCDICEKKFTFTSSLYYHKTTAHQESLDIVLFKCDVCGKEFKRKHTLKSHMLIHKRKRQICEICGKELSSKEKLKCHMRIHTGYKPFKCSHCDKTFTLKDRLIEHERVHTGERPFPCKYCKKGFTQRSSRTIHERMHTGEKPYSQIECHNCEICDKDFASLNDLNEHLNSHDDQYICETCDEKFKRVVDFTLHVYKHNKEKKFQCQICDYSTKWMAAILTHLGNTHQKNTQYKCDQCGKRFATFPVYQEHQNVHTNAHPYSCEICEKKFAFIHSLYYHKNNAHKELLDAVLFKCNHCEKEYKHRSSLTSHMLIHTGKCPICEICGKQLSSKVKLKFHMRIHTGYKPYKCSHCKQTFSVKGRLIDHERVHTGERPHTCQYCNKGFTQRSTRTIHERRHTGVKPYVCQFCNKGYVSKSTLNTHKKNCEGLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-