Dcer026881.1
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- -
- Assembly
- GCA_949768715.1
- Location
- OX458322.1:10641582-10645828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4e-05 0.0035 18.8 1.3 1 23 136 158 136 158 0.98 2 15 0.00011 0.007 17.9 3.4 1 23 164 186 164 186 0.93 3 15 1.5e-05 0.001 20.5 3.5 1 23 192 214 192 214 0.98 4 15 2.2e-08 1.4e-06 29.5 0.5 1 23 220 242 220 242 0.99 5 15 4.2e-06 0.00028 22.3 0.9 3 23 250 270 248 270 0.98 6 15 7.7e-07 5.1e-05 24.6 2.7 1 23 276 298 276 298 0.98 7 15 2.6e-06 0.00017 22.9 1.1 1 23 304 326 304 326 0.98 8 15 3.3e-06 0.00022 22.6 1.1 3 23 334 354 332 354 0.93 9 15 6.9e-07 4.6e-05 24.7 1.7 1 23 360 382 360 382 0.98 10 15 1.1e-07 7.1e-06 27.3 0.8 1 23 388 410 388 410 0.99 11 15 5.9e-06 0.00039 21.8 0.9 1 23 419 441 419 441 0.97 12 15 1.5e-06 9.9e-05 23.7 3.8 1 23 447 469 447 469 0.98 13 15 1.5e-05 0.00098 20.5 0.2 1 23 475 497 475 497 0.98 14 15 7e-07 4.6e-05 24.7 2.5 1 23 503 525 503 525 0.99 15 15 0.00013 0.0085 17.6 0.1 1 23 531 555 531 555 0.93
Sequence Information
- Coding Sequence
- ATGAATCTTTCAAGAAATGGCAGCATATCACAGAAATTATGCAGAACTTGCTTATCAGAaactgaagaattaaaatgcatttataaTATGGAATCCACAGAAGTACCGTTAGCCGATATGATTATGACATGTACTTCAATAcaaGTATCAGCTGATGATGGTTTGCCAGGAACTATATGTAACGAATGCATTTCTCTAGTATCACTTGCGTACAAATTTAAGCAAAAATGTGAAGAAGTTGACAatactttaagaaaatttattatcgatTCCGATACCAAATTGACTGAATATCCAACTGAACCAAAAGTTGAAATTGCCGAGCCAGATCCGaaagttattaaaattgaaaaaaaacattctgaCAAAAGGAAAAACCCCGAAGAAAattgcaagaaaaaattgtacgcATGCGAAATTTGCCACAAACAATATGTGCAGCATACTGGATTGGTTTGGCACATGCGTGTACATACCGGAGAAAGGCCTTTTCTGTGCAATCACTGTGGAAAGGGCTTTATTCGTTCGGATGATTTGTTAAGGCACTGCAGAATACACACAGGCGAACGTCCATTTGTCTGCAAAATATGCAATAAAGGGTTTCGTCAGAAATTTCACCTCTCAGAACACGAACGGTCGCATCGAGGAATACGAGATTACGTTTGTAAAGAATGTGGAAAGAGTTTTGCCCGGCAAGGTGTATTAAGAACACATATGAGAACTCACACAGGTGTTAAGCCGTACGGTTGCACTTTATGCACAAAAAGTTTTGTTGGGTCGGATACTTTAACGAAGCATATGCGAACACATACTGGAGAAAAGCCTTACATTTGCAATCATTGCGATCGAAGTTTCGCACAACTTGATCAATTGCACGTACATATTCGGACACATTCAGGAGAGAGGCCTTacgtttgtaaaatctgcTCAAAAGCGTTTACTCAACAGCACGGTTTAAATGTGCATCTTTTGAGTCATTCAGGAATTCGTCCGTTTTTGTGCGCCGCTTGTGGCAAATCGTTTACCAGATCGGatgatttaaaaaagcacaatCGAACGCACAGTCAAGAAAGGCCTTACATTTGTACAATTTGTCCCAAAGCGTTTACACAATCGTTTCATCTCTCTGAACACTTACGGACACACACCGATGATAAAgaatttactTGCAGCATTTGTAACAAAGCATTTGCAAGAAATGGATCGTTGAGATCACACCTTCGAACCCACACCAAAAGTTATGCAGAAAAGCAGTTTGCTTGTAGCGTTTGTGAAAAACGATTTAGCATCAATTATTCTCTGAATAAGCACATGCTGACCCATACAGGAGAGCGGCCATATTCTTGCCACATATGTTCAAAGGCTTTCACCCAGTCTGGTCATTTGGAAACGCATTTGAAAATGCACACAGGAGAAAAACCATTTATTTGTCAAGTTTGTGGTAAAGGTTTTGCAGTTACTTCCCGGCTCACTGTTCACATGAGAAGTCATACTGGGGAACGACCTTACACCTGCACTGTATGCGGAAAAGGGTGCACAACGTCCACCATGCTCAAGATACATATGCGCACACACACTGGTGAAACACCATATACTTGTCCATCGTGTCCCAAAGCTTTTGCACGATCTGATTTGCTTGGTCTTCATCGTAAAACCAACGCACATTGA
- Protein Sequence
- MNLSRNGSISQKLCRTCLSETEELKCIYNMESTEVPLADMIMTCTSIQVSADDGLPGTICNECISLVSLAYKFKQKCEEVDNTLRKFIIDSDTKLTEYPTEPKVEIAEPDPKVIKIEKKHSDKRKNPEENCKKKLYACEICHKQYVQHTGLVWHMRVHTGERPFLCNHCGKGFIRSDDLLRHCRIHTGERPFVCKICNKGFRQKFHLSEHERSHRGIRDYVCKECGKSFARQGVLRTHMRTHTGVKPYGCTLCTKSFVGSDTLTKHMRTHTGEKPYICNHCDRSFAQLDQLHVHIRTHSGERPYVCKICSKAFTQQHGLNVHLLSHSGIRPFLCAACGKSFTRSDDLKKHNRTHSQERPYICTICPKAFTQSFHLSEHLRTHTDDKEFTCSICNKAFARNGSLRSHLRTHTKSYAEKQFACSVCEKRFSINYSLNKHMLTHTGERPYSCHICSKAFTQSGHLETHLKMHTGEKPFICQVCGKGFAVTSRLTVHMRSHTGERPYTCTVCGKGCTTSTMLKIHMRTHTGETPYTCPSCPKAFARSDLLGLHRKTNAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -