Dcer021127.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:22739689-22741536[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.074 4.9 8.9 0.4 7 23 93 109 87 109 0.85
2 19 1.7e-05 0.0011 20.4 1.5 1 23 115 137 115 137 0.98
3 19 4e-05 0.0026 19.2 2.9 1 23 143 165 143 165 0.99
4 19 1.6e-07 1e-05 26.8 1.5 1 23 171 193 171 193 0.99
5 19 0.00011 0.0074 17.8 3.4 1 23 199 221 199 221 0.99
6 19 0.0002 0.013 17.0 2.6 1 23 227 249 227 249 0.98
7 19 9.2e-07 6.1e-05 24.3 2.2 1 23 255 277 255 277 0.99
8 19 0.00021 0.014 16.9 4.1 1 23 283 305 283 305 0.99
9 19 1.7e-07 1.1e-05 26.7 1.4 1 23 311 333 311 333 0.99
10 19 3.3e-06 0.00022 22.6 2.6 1 23 339 361 339 361 0.99
11 19 0.00021 0.014 17.0 5.0 1 23 367 389 367 389 0.98
12 19 9e-07 6e-05 24.4 0.9 1 23 395 417 395 417 0.99
13 19 1.9e-06 0.00012 23.4 2.9 1 23 423 445 423 445 0.99
14 19 6.9e-07 4.6e-05 24.7 1.1 1 23 451 473 451 473 0.99
15 19 1.7e-06 0.00012 23.5 2.2 1 23 479 501 479 501 0.99
16 19 1.3e-05 0.00084 20.8 3.9 1 23 507 529 507 529 0.98
17 19 0.00063 0.041 15.4 3.4 1 23 535 557 535 557 0.98
18 19 0.0025 0.17 13.5 4.3 1 23 563 585 563 585 0.99
19 19 0.0016 0.11 14.1 0.7 1 23 591 613 591 613 0.99

Sequence Information

Coding Sequence
ATGAATTCTGATTATTATGAGCAAGAAAATATTGTGACATCTGCCACCCAAACGAATTCAGCTCTCAATGCCCCAGGTCCATCCACTGCACCTTCTACTTCAAGAACGTTTAGATGTGATGACTTAGGGGATCACTTAGCAAATGAAGGAGGTGGTGCTTTACAAGAGAATTCGATAGGTGCCTTCCAAGAGGATAAGAGATCCCCTTTAAAAGGTGAACTCAAAAGCCACACGGTGACTGATACTAATGGGAGGAATTTTAAGTGCAACCAGTATGATAAAAGCTATGCTCTAAAAGATCAGCTCACAAAACACATATCCACTCATACGGAAGAAAACCCGTTTGAATGTACGTTTTGTAAGAAGAGATTATCGACGAAATGGGAGCTGAATGTGCACATGAACACTCATACCGGTGAGAGACCATATGAATGTGAGGTTTGTAAGAAAAGATATTTGAGCAAAAGCCACCTGAATGTGCACATGAGATCTCATACCGGTGAGAGACCATATGAATGTGAGGTCTGCAAGAAGAGATTTTCAACAAAGGGAGATCTGAAAACGCACATGAGTACTCACAGCGGTGAGAGACCATATGAATGTGAGGTTTGTAAGAAaagatatttgaaaaaaagccacCTGAATGTGCACATGAGATCTCATACAGGTGAGAGACCATATGAATGTGAGGTTTGTAAGAAAAGATATTTGAGCAAAAGCCACCTGAATGTGCACATGAGCTCTCATACCGGTGAGAGACCATATGAATGTGAGGTCTGTAGGAAGAGATTTTCAACAAAGGGAGATCTGAAAACGCACAAGAGGACTCACAGCGGTGAGAGACCATATGAATGTCAGGTTTGTAAGAAaagatatttgaaaaaaagccacCTGAATGTGCACATGAGATCTCATACCGGTGAGAGACCATACGAATGTGAGGTCTGTAAGAAGAGATTTTCAGCAAAGGGAAATCTGAAAACGCACATGAGAACTCACACTGGTCAGAGACCATATGAATGTGAGGTATGTAAGAAGAGATTTTCGACGAAGGCAACTCAGAAAACGCACATGAGAACTCATACCGGTGAAACATCATATGTGTGTGAGGTTTGTAAGAAGAAATGTTTAACCAAGAGCCACCTGAATGCGCACATGAGGTCTCATACTGGAGAGAGACCATATGAATGTAAAGTCTGTAAGAAGAGAGTTTCGACGAAGTGGGAGCTTACAGTGCACATGAGAACTCACACCGGTGAAAGACCATATGAATGTGAGGTTTGTAAGAAGAGATATATAACCAAGACCCACCTGAATGTGCACATGAGATCTCATACCGGAAAGAGACCATATGAATGTGAGGTCTGTAAGAAGAGATTTTCAACAAACAGGGACGTGAATGTGCACATGAGGACTCATACCGGTGAGAGACCATATGAATGTGAGGTATGTAAGAAGCGATTTTCGACGAAGGAAATTCTGAAAAAGCACATGAGGACTCATACTGGTGAGAGACCACATAAATGTGAGGTTTGTAAGAAGAGATATATAACCAAAAGCTTCCTGAATGTGCACATGAGATCTCATACCGGAGGGAGACTATATGAATGTAAAGTCTGTAAGAAGAGATTTCCGACGACGTGTGGACTGAATGAGCACACGAAGAGTCATACCGGTGAGAGACCATATGAATGTGAGGTTTGTAAGAAGAGATGTTTGAGCAAGATCCACCTGAATGTGCACATGAGATCTCATACCGAAGAGGGACCATTCCAATGTAAAGTCTGTAAGAAGATATTTTTGGCAAGCTCGGGCATGAATGTACACATGAAGACTCATACCAGTTAG
Protein Sequence
MNSDYYEQENIVTSATQTNSALNAPGPSTAPSTSRTFRCDDLGDHLANEGGGALQENSIGAFQEDKRSPLKGELKSHTVTDTNGRNFKCNQYDKSYALKDQLTKHISTHTEENPFECTFCKKRLSTKWELNVHMNTHTGERPYECEVCKKRYLSKSHLNVHMRSHTGERPYECEVCKKRFSTKGDLKTHMSTHSGERPYECEVCKKRYLKKSHLNVHMRSHTGERPYECEVCKKRYLSKSHLNVHMSSHTGERPYECEVCRKRFSTKGDLKTHKRTHSGERPYECQVCKKRYLKKSHLNVHMRSHTGERPYECEVCKKRFSAKGNLKTHMRTHTGQRPYECEVCKKRFSTKATQKTHMRTHTGETSYVCEVCKKKCLTKSHLNAHMRSHTGERPYECKVCKKRVSTKWELTVHMRTHTGERPYECEVCKKRYITKTHLNVHMRSHTGKRPYECEVCKKRFSTNRDVNVHMRTHTGERPYECEVCKKRFSTKEILKKHMRTHTGERPHKCEVCKKRYITKSFLNVHMRSHTGGRLYECKVCKKRFPTTCGLNEHTKSHTGERPYECEVCKKRCLSKIHLNVHMRSHTEEGPFQCKVCKKIFLASSGMNVHMKTHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-