Dcer021544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:25613520-25615637[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2.5e-06 0.00017 23.0 1.2 1 23 52 74 52 74 0.97
2 22 5.8 3.8e+02 3.0 0.1 9 21 81 93 79 94 0.86
3 22 0.92 61 5.5 4.5 1 23 118 140 118 140 0.94
4 22 4.6e-06 0.0003 22.1 0.5 1 23 145 168 145 168 0.92
5 22 3.9e-05 0.0026 19.2 4.1 1 23 174 196 174 196 0.97
6 22 6e-07 4e-05 24.9 7.1 1 23 202 224 202 224 0.99
7 22 0.036 2.4 9.9 2.1 1 21 230 250 230 252 0.95
8 22 4.1e-05 0.0027 19.2 4.1 1 23 258 280 258 280 0.97
9 22 5.5e-07 3.6e-05 25.1 4.4 1 23 286 308 286 308 0.98
10 22 0.00014 0.0089 17.5 0.6 1 23 314 336 314 336 0.98
11 22 5.2e-05 0.0034 18.8 0.6 1 23 342 364 342 364 0.98
12 22 4.9e-06 0.00032 22.1 5.5 1 23 370 392 370 392 0.98
13 22 9.5e-06 0.00063 21.2 0.1 2 23 399 420 398 420 0.97
14 22 2.2e-05 0.0015 20.0 1.5 1 23 426 448 426 448 0.98
15 22 2.9e-06 0.00019 22.8 2.5 1 23 454 476 454 476 0.97
16 22 0.00053 0.035 15.7 6.0 1 23 482 504 482 504 0.98
17 22 6.7e-06 0.00044 21.6 1.5 1 23 510 532 510 532 0.98
18 22 3e-05 0.002 19.6 5.1 1 23 538 560 538 560 0.99
19 22 4.5e-05 0.003 19.0 1.8 1 23 566 588 566 588 0.98
20 22 5.4e-07 3.5e-05 25.1 0.7 1 23 594 616 594 616 0.98
21 22 9.8e-05 0.0065 18.0 2.2 1 20 622 641 622 644 0.95
22 22 4.3e-07 2.8e-05 25.4 5.0 1 23 650 672 650 672 0.99

Sequence Information

Coding Sequence
ATGGATaatccggattttaatttcgcTGCAATTAAATTGGAACCAGATGAACTTATCATCAAAGAAGAAATCAACGATCCGCTTTATTTAGGAGACAATCCAGAAAATAACGAGGTTAAATCGCACAAGTCGATTGATGAGGGCGAGAAACCTTTTCAGTGTCCACGTTGTGATCAACGTTTTACCCAGAATGATTTCCTCAAGAGACACATGGTGattcatcagaacaaaaaaccttttaaattcGTCCAATCGGGACATCTCAAAGCGCACAAGTCGACTCAGGAGGGTAAGAAACCTTCCAAATGTCCAAAAAAATCGCATTTGTTAAAACACAAGGacaagaaaccttttaaatgtcaacattgtGACAAATGCCTCTTTGGAGGTGCCAAATTTCGATTGCATTTGGTGACTCACGGGGTTAAACCTTTTGAATGTCAACAATGTGATCAGAAATTTACCAGGAATAGCTCTCTCATAAGGCACATTGTGTTGGTGCACAAGAATGACAGTCCTTTTAAGTGTCAACTGTGTGGCCAAAGTTTTGCTCAAAAGCCACATCTCAAACATCACTTGTTCGTTCATGAGggtaaaaaatcatttcgGTGCCAACAGTGTGGCAAACATTTCTGCCGAAAATCTAATCTTAGAGTGCACATGTTGACTCATTGCAATGAAAAGTCCTTTAAGTGCCAACTGTGTGACAAAATTTTAGTCACAAGTTTGAAACTCAAAGAACACATGTTATGTCACGCCGACACGAAACCTTTCAAATGTCAACTATGCGATAAAAGCTTCACTCACAAGGATCGTCTCAACAGACACAATTtgattcatgagaataaaaaagcGTTCAAATGTCAACAATGTGGCCGAAGCTTTACCCAAAATTCTCATCTAAAAACGCACTTATTGTCGCATGAGGGTCACAAACCTTTCAAGTGCCAACTGTGTGACCAACGTTTTGCTCAAAACGGCGGTCGCACAAGGCACATGTTAATTCACGAAGGTAACAAACCCTTTAAATGCCAACTATGCGACAAagctttttatttgaaaggaTCTCTTAAATTGCACATATCGGTTCACGAGGGTAGGAAACCTTTCAAGTGCCAACATTGTGATAAGGCCTTTAACCGAAAGTACAGCCTCAAACTGCACATGTTTTCGCACGAAAGCCAAAAACCCATCCAATGTGTACAATGTGGTCAAGCGTATGCTCGAAGTGGCAGCCTCAAGCGACACATGATGGTACATACGGGcgagagacctttcaaatgtgaacagtgtgaGCTcagttttacccaaaatgtCCATCTCAAAGAACACTTATTGATTCATGAGGGGAAAAAACCGTACaattgccaacagtgtgacaaaCGTTTCACCACGACTTCAAGTCTTAAACAGCACATGTTGTTGCATGAGGGTAAGAGACCCTTCAAGTGCCACCTGTGTGACAAAACTTTTCACTTGAAAAGAACTCTCAAATCGCACATATTAATTCACGAGGGTCAAAAATCGTTCAAGTGCCAACATTGTGACAGAGCTTTTAATCAAAGGTCGGGTCTCTCGGCGCACTTGGTGACTCACAGCGGAGACAGGCCTTACAAGTGCCAGTTGTGCGACAAGAGTTTCACTCTAAGCACCCATCTCCATcaacacatgctgattcatgggAGCGACAAACGTTTCAAATGCCAATTGTGCGACAGTGCTTTCAACCGCAAGTCTAGTCTCAATCTGCACATGTTTTCACACGAGGGTACGAAACCGTTTCGATGTCAACTATGCGATCAAAGCTTTGTTCAAAATAGCGGTCTCAAACGGCACATGTTGGTGCATAAGGGCGAAAGACCGttcaaatgtcaacagtgtgagatgagttttacccaaaatggaCATCTCAAACGACACACTTGGATTCATGAGGGTAAGAAGCCTTACAAATGCCAAGAGTGcgaaaaatgttttacccagAATTCCAGTCTCAAAAAGCACCTGTTGACTCACGAGGGTAAGAAAACGAATTCTCAAATCGCACATGTTGGTCCATGA
Protein Sequence
MDNPDFNFAAIKLEPDELIIKEEINDPLYLGDNPENNEVKSHKSIDEGEKPFQCPRCDQRFTQNDFLKRHMVIHQNKKPFKFVQSGHLKAHKSTQEGKKPSKCPKKSHLLKHKDKKPFKCQHCDKCLFGGAKFRLHLVTHGVKPFECQQCDQKFTRNSSLIRHIVLVHKNDSPFKCQLCGQSFAQKPHLKHHLFVHEGKKSFRCQQCGKHFCRKSNLRVHMLTHCNEKSFKCQLCDKILVTSLKLKEHMLCHADTKPFKCQLCDKSFTHKDRLNRHNLIHENKKAFKCQQCGRSFTQNSHLKTHLLSHEGHKPFKCQLCDQRFAQNGGRTRHMLIHEGNKPFKCQLCDKAFYLKGSLKLHISVHEGRKPFKCQHCDKAFNRKYSLKLHMFSHESQKPIQCVQCGQAYARSGSLKRHMMVHTGERPFKCEQCELSFTQNVHLKEHLLIHEGKKPYNCQQCDKRFTTTSSLKQHMLLHEGKRPFKCHLCDKTFHLKRTLKSHILIHEGQKSFKCQHCDRAFNQRSGLSAHLVTHSGDRPYKCQLCDKSFTLSTHLHQHMLIHGSDKRFKCQLCDSAFNRKSSLNLHMFSHEGTKPFRCQLCDQSFVQNSGLKRHMLVHKGERPFKCQQCEMSFTQNGHLKRHTWIHEGKKPYKCQECEKCFTQNSSLKKHLLTHEGKKTNSQIAHVGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-